Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H05
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   3.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   6.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 146 GENCELDVGD 117
           G+NCEL+V D
Sbjct: 216 GQNCELNVDD 225


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 199  MRIVPNDIGQSRP 237
            M I PN + Q+RP
Sbjct: 1426 MSIAPNRVSQARP 1438


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 199  MRIVPNDIGQSRP 237
            M I PN + Q+RP
Sbjct: 1426 MSIAPNRVSQARP 1438


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 DIQLAVFSNILGVSIFLLVILYHYINA 203
           DI+ +   ++LG +   L+I+  + N+
Sbjct: 327 DIERSTILSVLGTACTFLIIIVQFRNS 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,612
Number of Sequences: 336
Number of extensions: 1360
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)