Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_H05
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    28   2.3  
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774...    27   3.1  
11_04_0320 + 16354122-16354226,16354652-16356859                       27   5.3  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 26   9.3  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 26   9.3  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    26   9.3  
06_03_0889 + 25702777-25703439                                         26   9.3  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 114 MITDIQLAVFSNILGVSIFLLVILYHYINANSSK*YRSIAAIVKALVS 257
           +ITDI+    +  L V +F   +  H +NA SS+ ++   A VK LVS
Sbjct: 438 LITDIEKIAEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVA-VKILVS 484


>04_04_1568 - 34475707-34476822,34476894-34477083,34477330-34477464,
            34477571-34477668,34477789-34477979,34478784-34479286,
            34480169-34481568,34481655-34481855
          Length = 1277

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 79   LKLCISFVLRFFWIRVDTGRASA 11
            + +CI  ++RF W R+D  RA A
Sbjct: 1200 IDMCIGSLIRFVWDRLDGARAKA 1222


>11_04_0320 + 16354122-16354226,16354652-16356859
          Length = 770

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 132 LAVFSNILGVSIFLLVILY-HYINANSSK*-YRSIAAIVKALVSLIKKCALY*DVNKSF 302
           L  FS+IL V   ++ +     I+A + K  + S   +  ALV++  KC    D NK+F
Sbjct: 393 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 63   LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 155
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1010 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1040


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 63   LIHNFNNLIQFKTSNLKMITDIQLAVFSNIL 155
            L+H+ +  I FK  +   + D  L  FSNIL
Sbjct: 1011 LLHSVDGSINFKPFDFDKLADDMLQEFSNIL 1041


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 159 VSIFLLVILYHYINANSSK*YRSIAAIVKALVSLIKKCAL 278
           +++  L +L +Y    SSK   SI +  KA++SL   C+L
Sbjct: 399 IAVLGLFVLIYYSPGGSSKKGMSIPSGAKAVLSLALLCSL 438


>06_03_0889 + 25702777-25703439
          Length = 220

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 294 YLHLNIKHIFLLETPMLLQWPR 229
           Y+HL I+  F L TP+ L  PR
Sbjct: 60  YMHLVIRETFRLHTPLPLLLPR 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,845
Number of Sequences: 37544
Number of extensions: 127126
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)