Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G24
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   7.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.8  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 644 KCMMLNNLVGFSENNHLHSAPD 579
           K ++L+ +VG    NHL+  P+
Sbjct: 30  KVLLLSQIVGVFPLNHLNEEPE 51


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 412 FDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLLIIQVV 576
           F+D+  +  VFI    +I +   L  ++S   I  L+LK    ++ L    I +V
Sbjct: 232 FNDIFGWPLVFITGRFVIKILVALNFFTSTLEIDNLYLKHKLEISSLVQTAITLV 286


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 374 FIIVNVLRIPVCHSMICTYIVSFLYFI 454
           FII+ V+   VC+ MI      F ++I
Sbjct: 502 FIIIPVILTSVCYFMIGLNSQGFRFYI 528


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,077
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)