Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G23
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.0  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    26   5.0  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 541 R*TSVAAESDPGPPRKSRCGTKTIRRSAKCALTIHSSLRNQTRQV 675
           R TS+A++ D G P+KS  G      ++     + +S  +QT+QV
Sbjct: 633 RNTSIASDID-GVPKKSTLGAPPAAHTSAQMQRMSNSFASQTKQV 676


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 471 SARGRSNNATNRSKQLVWSTICEEVNK 551
           S+ GR+   ++  KQ +W+   EEVN+
Sbjct: 290 SSSGRAAGYSDEKKQNLWNLFAEEVNR 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,428
Number of Sequences: 5004
Number of extensions: 54478
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)