Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_G23
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 32 0.38
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 32 0.38
Z77133-4|CAB00867.3| 232|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY205144-1|AAO46042.2| 201|Caenorhabditis elegans NK-2 family h... 30 1.5
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 30 2.0
Z73974-7|CAL90892.1| 283|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z73974-6|CAL90891.1| 215|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z73974-5|CAA98272.1| 346|Caenorhabditis elegans Hypothetical pr... 29 3.5
X72943-1|CAA51448.1| 360|Caenorhabditis elegans Wnt-2 protein p... 29 3.5
U10081-1|AAA20841.1| 346|Caenorhabditis elegans CEH-22 homeopro... 29 3.5
U10080-1|AAA20840.1| 346|Caenorhabditis elegans CEH-22 homeopro... 29 3.5
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 29 4.6
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 32.3 bits (70), Expect = 0.38
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCK 626
TP QVK+W++N++ KCK
Sbjct: 190 TPTQVKIWFQNHRYKCK 206
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.38
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCK 626
TP QVK+W++N++ KCK
Sbjct: 190 TPTQVKIWFQNHRYKCK 206
>Z77133-4|CAB00867.3| 232|Caenorhabditis elegans Hypothetical
protein K03A11.3 protein.
Length = 232
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHD 641
T QVK+W++N + KCK A D
Sbjct: 175 TATQVKIWFQNRRYKCKRLAQD 196
>AY205144-1|AAO46042.2| 201|Caenorhabditis elegans NK-2 family
homeodomain proteinCEH-28 protein.
Length = 201
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHD 641
T QVK+W++N + KCK A D
Sbjct: 144 TATQVKIWFQNRRYKCKRLAQD 165
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 473 RQGSVQQRNQQK*TAGVVHDLRGGEQALRRRATPDP 580
R+GSV+ +N Q AG+VH G E + T DP
Sbjct: 702 REGSVESKNHQAQEAGMVHPAHGSES----KGTEDP 733
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 473 RQGSVQQRNQQK*TAGVVHDLRGGEQALRRRATPDP 580
R+GSV+ +N Q AG+VH G E + T DP
Sbjct: 702 REGSVESKNHQAQEAGMVHPAHGSES----KGTEDP 733
>Z73974-7|CAL90892.1| 283|Caenorhabditis elegans Hypothetical
protein F29F11.5c protein.
Length = 283
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHDTQQP 653
TP QVK+W++N++ K K ++H T +P
Sbjct: 166 TPTQVKIWFQNHRYKTK-KSH-TDKP 189
>Z73974-6|CAL90891.1| 215|Caenorhabditis elegans Hypothetical
protein F29F11.5b protein.
Length = 215
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHDTQQP 653
TP QVK+W++N++ K K ++H T +P
Sbjct: 98 TPTQVKIWFQNHRYKTK-KSH-TDKP 121
>Z73974-5|CAA98272.1| 346|Caenorhabditis elegans Hypothetical
protein F29F11.5a protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHDTQQP 653
TP QVK+W++N++ K K ++H T +P
Sbjct: 229 TPTQVKIWFQNHRYKTK-KSH-TDKP 252
>X72943-1|CAA51448.1| 360|Caenorhabditis elegans Wnt-2 protein
protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 437 PCVSPAR*SSSIAPCGRVWRGEKWHCALTYHSSG--GPYARLPAFSLVFS 294
P VS R ++I C R + G +W+C+ T++S+G GP ++ F+
Sbjct: 67 PAVSIGR-QNAIQECQRQFTGHRWNCS-THYSTGMLGPIHKMATREAAFT 114
>U10081-1|AAA20841.1| 346|Caenorhabditis elegans CEH-22
homeoprotein protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHDTQQP 653
TP QVK+W++N++ K K ++H T +P
Sbjct: 229 TPTQVKIWFQNHRYKTK-KSH-TDKP 252
>U10080-1|AAA20840.1| 346|Caenorhabditis elegans CEH-22
homeoprotein protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 576 TPAQVKMWYENYKKKCKMRAHDTQQP 653
TP QVK+W++N++ K K ++H T +P
Sbjct: 229 TPTQVKIWFQNHRYKTK-KSH-TDKP 252
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 519 VWSTICEEVN-KRCGGERPRTPAQVKMWYENYKKKC--KMRAHDTQQPPQSDTSSL 677
V+S EE+ K+C E R+ + + +++C K R H T QPP T SL
Sbjct: 293 VYSIDAEEIEGKKCMLECIRSSCLPRYVECHRRRRCSRKQRCHTTTQPPSPTTESL 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,866
Number of Sequences: 27780
Number of extensions: 327259
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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