Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_G20
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 53 5e-08
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 44 2e-05
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 29 0.98
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.98
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 3.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 3.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.9
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 6.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.1
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +2
Query: 500 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 679
FP E + + K++LL++ +FAP AF + EGK R A +L A++ P L+AN+
Sbjct: 94 FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANY 153
Query: 680 KWLTLFQVINLAFIPPMLRVLXMNIVGFGW 769
FQ +N +P ++ V W
Sbjct: 154 MVWPFFQTVNFWLMPLQYQMPFACTVAIFW 183
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/98 (24%), Positives = 44/98 (44%)
Frame = +2
Query: 476 FYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALY 655
++ + + E+ + ++ L++ IFAPL F + E K++ Y
Sbjct: 109 WFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFFLFMGITECKSYERLKSYFRKHY 168
Query: 656 LPVLEANWKWLTLFQVINLAFIPPMLRVLXMNIVGFGW 769
P L+AN+ Q+ N F+P +L+V+ N V W
Sbjct: 169 WPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVW 206
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.7 bits (61), Expect = 0.98
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 500 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 679
F + +++ + ++L F + + ++S +F KT L L ++L +NW
Sbjct: 135 FSKPTSAITCSNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNW 194
Query: 680 KWLTLF 697
KWL F
Sbjct: 195 KWLAYF 200
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 391 RGWRINQT*SYSRIWFLRIIIWWYSSS 471
R W N T ++SRIW + I +WY S+
Sbjct: 328 RSWFHNVT-NFSRIWVMHISAYWYYSA 353
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 464 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 616
+P+ +++++ S SF P A K +E + LM S+Y FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 585 ENACINGAKIKRSNNNFFASGNDADSS 505
ENA N + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 418 SYSRIWFLRIIIWWY 462
++SRIW L I ++WY
Sbjct: 423 NFSRIWILHISVFWY 437
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 288 DNESSSLISTEFIFTSD*DESYYKWVQLAV*HHRSWLENQSDLILFSHLVFTDYY 452
D S+ L F S+ ++Y K + L V H RS+L + I+ H DYY
Sbjct: 379 DEPSNMLDVPSIAFLSEYLQTY-KNIVLVVSHDRSFLNEVATDIIHQHSERLDYY 432
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 252 KFIINNNVSVKTDNESSSLISTEFIFTSD*DESYY 356
K+ +N +K DN++ S+I +FT ESY+
Sbjct: 669 KYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYF 703
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,239
Number of Sequences: 5004
Number of extensions: 54847
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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