Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G20
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    41   0.001
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    40   0.002
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    33   0.25 
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           33   0.33 
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    31   1.0  
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    30   2.3  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    28   7.2  

>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
 Frame = +2

Query: 470 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAA--LKQL 643
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK       LKQ+
Sbjct: 156 HVWYLYLSKLVTINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPKLKQI 214

Query: 644 FAL--------------YLPVLEANWKWLTLFQVINLAFIPPMLRVLXMNIVGFGW 769
                            +L  + ANW+    FQ +N  F+P   +VL  N V   W
Sbjct: 215 LCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVPQKFQVLAANFVALAW 270


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/85 (30%), Positives = 43/85 (50%)
 Frame = +2

Query: 470 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFA 649
           H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   EGK     + +L  
Sbjct: 156 HVWYLYLSKLVMINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLEGKP-SLVVPKLKQ 213

Query: 650 LYLPVLEANWKWLTLFQVINLAFIP 724
            +L  + ANW+    FQ +N  F+P
Sbjct: 214 EWLSSVIANWQLWIPFQFLNFYFVP 238


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +2

Query: 470 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQ-AFSLYSLARFEGKTHRAALKQLF 646
           H+ ++ ++ +F  +  +  +AKK+LLE++  +P     F  Y     E +  +    ++ 
Sbjct: 89  HFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVK 148

Query: 647 ALYLPVLEANWKWLTLFQVINLAFIPPMLRVLXMNIVGFGW 769
             Y  V  + W +  +   IN  ++P   RV+  + V   W
Sbjct: 149 KQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCW 189



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 310 YLQNLYLHPIKTKAITSG 363
           YL+ L LHP++TK IT+G
Sbjct: 32  YLRQLQLHPLRTKMITAG 49


>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
 Frame = +2

Query: 464 VPHYFYETVERLFPE--ESASFP-LAKKLLLERLIFAP--LMQAFSLYSLARFEGKTHRA 628
           V HY+YE ++R      +  +F  +A K+  + L+F P  L+  FS   LA   G++   
Sbjct: 57  VGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLLLFFSYVGLA--SGRSVEQ 114

Query: 629 ALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLXMNI 754
               +   ++P L          Q+ N  FIP   ++L +N+
Sbjct: 115 VKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNL 156


>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 539 LLLERLIFAPLMQA-FSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLA 715
           +L+E+L  +P     F +Y     EG+       +L   Y  V    WK+  +   IN  
Sbjct: 58  VLVEQLTASPWNNMMFMMYYGLVVEGRPFSQVKSKLKKDYASVQLTAWKFWPIVSWINYE 117

Query: 716 FIPPMLRVLXMNIVGFGW 769
           ++P  LRVL  + V   W
Sbjct: 118 YMPLQLRVLFHSFVASCW 135



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 307 SYLQNLYLHPIKTKAITSG 363
           +Y++ L  HP++TKAITSG
Sbjct: 11  AYMRQLQAHPLRTKAITSG 29


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 280 SKPIMNLVASYLQNLYLHPI 339
           S+P +NL  SYLQN YLHPI
Sbjct: 692 SEPNLNL-KSYLQNAYLHPI 710


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -1

Query: 581 MLALMVQRSNVPIITFLQVGMMQILQ----ETAFQLFHRNSEELYHQIIIRKNQMRE*DQ 414
           + ALM+    +PI  ++ + M++ILQ        +++H  S++  H      N+  E  Q
Sbjct: 369 LTALMLYSYFIPISLYISIEMVKILQALFINQDIEMYHEESDKPTHARTSNLNE--ELGQ 426

Query: 413 V*LILQPRSVMLDCQLYPLV 354
           V  +L  ++  L C +   +
Sbjct: 427 VDTVLSDKTGTLTCNMMEFI 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,585
Number of Sequences: 37544
Number of extensions: 308207
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)