Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G18
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   1.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   3.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.2  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 559 VHTLYHRYSHLCINNNIPTTSIQQVLQ 479
           +H L + Y H+ + NN+ + S+Q + Q
Sbjct: 324 LHELRNNYFHMDLENNVQSYSLQLLHQ 350


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 529 GDCIYGKGCAHRYR 570
           G C  G GC HR+R
Sbjct: 371 GTCGNGYGCEHRWR 384


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 49  CLRLF*KQIKILFCN 5
           CLRL  KQ+KI F N
Sbjct: 153 CLRLSEKQVKIWFQN 167


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 702 ENTNPHYQNIVRRIHCQLGKC 764
           E   PH  N+V R  C+ G C
Sbjct: 125 EPFRPHPHNLVGREGCKKGVC 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,802
Number of Sequences: 336
Number of extensions: 2856
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)