Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G18
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    28   8.4  

>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 274 NYLVRYDPFPERYLGHVNIYLCMINLSTTFLLIFYFNREYR*FIC 408
           ++L R++ + E  +   NI L +I++ TTF + ++F+  +R  +C
Sbjct: 263 DFLNRHNEYFEVMIEVSNI-LIVIHIGTTFFIYYFFSARFRNILC 306


>Z49131-2|CAA88975.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC373.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 577 CHPCTGVHTLYHRYSHLCINNNIPTTSIQQVLQIPK 470
           CH    + TL+H +SH+  N  + +   Q + ++ K
Sbjct: 92  CHDAPNIPTLFHHFSHVGFNVLVMSEEGQNLREVAK 127


>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 743 NSPYNILIMWISIFNLX*FLKYNKVSYGKILFIDFKRSMQSLAY 612
           +S  NI++ +ISIF++   L   K SYG  +   F   MQS  Y
Sbjct: 65  SSSINIIMAFISIFDICSMLFRMKQSYGPSIEYIFDPCMQSKWY 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,106
Number of Sequences: 27780
Number of extensions: 260092
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)