Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G14
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   3.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.4  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 132 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 227
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 132 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 227
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 132 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 227
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 132 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 227
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 132 DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 227
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 238 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPS 131
           P P    + F R   IS   + P  S  +  S SPS
Sbjct: 172 PSPASDSECFDRRKFISALVNAPSVSPASLPSISPS 207


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 93  DVEXXLSSVGIEADGEKLKKVITELNGKDVEQL 191
           DVE  LS   + A GE+   + +    ++V+QL
Sbjct: 329 DVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,040
Number of Sequences: 336
Number of extensions: 1069
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)