Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G12
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    44   7e-06
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    42   3e-05
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    41   5e-05
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   0.90 
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   0.90 
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   0.90 
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   0.90 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 26/74 (35%), Positives = 33/74 (44%)
 Frame = +2

Query: 2   VXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
           V P W  +FAKALEG ++++L+ NIGSG                                
Sbjct: 38  VEPIWATIFAKALEGKDLKELLLNIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKE 95

Query: 182 XXXSDDDMGFGLFD 223
              SD+DMGFGLFD
Sbjct: 96  EEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 32/74 (43%)
 Frame = +2

Query: 2   VXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
           V P W  +FAKALEG ++++L+ NIGS                                 
Sbjct: 38  VEPIWATIFAKALEGKDLKELLLNIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKE 96

Query: 182 XXXSDDDMGFGLFD 223
              SD+DMGFGLFD
Sbjct: 97  EEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 25/74 (33%), Positives = 32/74 (43%)
 Frame = +2

Query: 2   VXPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
           V P W  +FAKALEG ++++L+ NIGS                                 
Sbjct: 38  VEPIWATIFAKALEGKDLKELLLNIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKE 95

Query: 182 XXXSDDDMGFGLFD 223
              SD+DMGFGLFD
Sbjct: 96  EEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 191 SDDDMGFGLFD 223
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 191 SDDDMGFGLFD 223
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 191 SDDDMGFGLFD 223
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 191 SDDDMGFGLFD 223
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 62  GHGH*CLPRLWRTDL 18
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,016
Number of Sequences: 5004
Number of extensions: 7565
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)