Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_G11
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 314 1e-86
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 313 1e-86
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.1
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 2.1
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 2.1
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 8.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 314 bits (770), Expect = 1e-86
Identities = 141/206 (68%), Positives = 166/206 (80%)
Frame = +2
Query: 50 MGRRPAXCYRYCKNKPYPKSRFCRGVPDPKXRIFDLGKXRANVDDFPLCVHLVSDEYEQL 229
M RRPA CYRYCKNKPYPKSR+ R VPD K RIFDLG+ RA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 410 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 589
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 590 FEKLREEGRLANDGCIVQYRPEHGPL 667
+ + R G + DGC ++ + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 313 bits (769), Expect = 1e-86
Identities = 141/206 (68%), Positives = 166/206 (80%)
Frame = +2
Query: 50 MGRRPAXCYRYCKNKPYPKSRFCRGVPDPKXRIFDLGKXRANVDDFPLCVHLVSDEYEQL 229
M RRPA CYRYCKNKPYPKSR+ R VPD K RIFDLG+ RA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 410 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 589
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 590 FEKLREEGRLANDGCIVQYRPEHGPL 667
+ + R G + DGC ++ + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +2
Query: 320 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 487
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 488 QVIEALRRAKFKFPGRQKIYVSK 556
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 619 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 488
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 619 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 488
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 619 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 488
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 619 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 488
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 424 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 308
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 462 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 620
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 107 SRFCRGVPDPKXRIFDLGKXRANVDDFP-LCVHLVSDE 217
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 492 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCS 644
SS + +P SSS STY S + S ++S S + ++SP+ ++S S
Sbjct: 651 SSSISTIPISSS----LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 492 SSRLCAVPSSSSPDVKRSTYQRSGVS 569
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 293 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 397
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,625
Number of Sequences: 5004
Number of extensions: 68860
Number of successful extensions: 225
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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