Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G10
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    34   0.030
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.86 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   2.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.1  
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    26   8.1  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   8.1  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 41/156 (26%), Positives = 64/156 (41%)
 Frame = +3

Query: 153 LDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLK 332
           LD   AF +L  N     +  S+  WN  L V+  T+       SLL   ++  P+  + 
Sbjct: 406 LDQGSAFPSLAKNP---VNPYSKDTWN--LNVIASTNG------SLLS--YIDNPVSGIT 452

Query: 333 QSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKASKAYEND 512
              L  G+    F  F  +    +  S NY+ +GDTK    +P +  E   +A+     D
Sbjct: 453 CPWLYVGMC---FSTFCWHVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAALDIAPD 509

Query: 513 NTHILKLWQNTKNAIYGLAPRLTSLGLANKGVTTYF 620
                 L +  K+ +Y LA  +    L  +GV  YF
Sbjct: 510 ------LVKKQKDLLYQLATMINPDELQKRGVDVYF 539


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -1

Query: 730 KPSSATVLNVRQMYASMSLVFIQSLTRFESSSVQLLEKYVVTPLLAKPRLVNLGAS 563
           K S+  +LN  Q   S++   I S    E++SV   EK    PL A+P  + LGAS
Sbjct: 4   KVSADVLLNKYQTSISITKNLINSWLGNENTSVSSDEKNDDPPLQARPPRLGLGAS 59


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 26/128 (20%), Positives = 57/128 (44%)
 Frame = +3

Query: 246 VLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYK 425
           VL++     P+I+ +L  +    P   L++  L    S+ D+  + +YA      +   K
Sbjct: 3   VLIEWVAIYPQIYDILEHINYV-PSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVK 61

Query: 426 GFGDTKFIPNLPAESLELILKASKAYENDNTHILKLWQNTKNAIYGLAPRLTSLGLANKG 605
            +G+TK    +     E I +  + +   +  + +  ++ KN ++     L++L L   G
Sbjct: 62  YYGETKTYGEVFVLENERISQLHRLFV--SWTVSERAEHLKNLLFDAG--LSNLPLVELG 117

Query: 606 VTTYFSSN 629
              +F+S+
Sbjct: 118 GNVFFNSH 125


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 594 ANKGVTTYFSSNCTEEDSNLVNDW 665
           AN+  T  +S +CT+EDS ++  W
Sbjct: 646 ANRNDTHLWSYDCTDEDSAIIGPW 669


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 447 IPNLPAES-LELILKASKAYENDNTH 521
           + NLP E+ L+ +L   + +ENDN H
Sbjct: 305 LKNLPEEATLDCMLSICQVFENDNLH 330


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 725 VISNSFERTTNVRLYEFSFHPIVNE 651
           VIS +  +T  VR+ +  FHP+V +
Sbjct: 9   VISRAMPKTAKVRVAKEKFHPVVKK 33


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 222 PDSNNEHIISHSLLDYQKPANYPTP 148
           P+ N  H++  SLL+Y+   +Y  P
Sbjct: 180 PNKNEAHLLVTSLLEYKLKGSYAAP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,651,564
Number of Sequences: 5004
Number of extensions: 76652
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)