Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G10
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0415 - 21940466-21941536                                         30   2.1  
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121...    29   4.9  
01_04_0054 - 15456668-15459691                                         28   8.5  

>01_05_0415 - 21940466-21941536
          Length = 356

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = +3

Query: 210 YLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVY 389
           YLS++ W   L+     + + P  F  +HR+F    +  + +   +     DD  A +VY
Sbjct: 180 YLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRRE--ERDDLMAAIVY 237

Query: 390 AGGLFANSGNYKGFGDTKFIPN 455
               +A    Y   G  + + N
Sbjct: 238 EADAWARDPRYGVAGVVRSLTN 259


>12_02_0507 +
           19810446-19811048,19811220-19811466,19811590-19812125,
           19812397-19813620
          Length = 869

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 306 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG 434
           +AE L N K+ A++ G +ED  + F   A  LFA+  N  G G
Sbjct: 426 IAESLTNCKRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEG 466


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 822 GNKRLCTILYPSLGVVLTMFRRWQDEWCIGVSRHQ 718
           G KR    +YP  G V  +++ W  +W     +H+
Sbjct: 595 GRKRSSYEIYPRKGEVWALYKGWSMQWSSDADKHR 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,743,559
Number of Sequences: 37544
Number of extensions: 449446
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)