Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_G09
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.61 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.5  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   5.7  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   9.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.9  

>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 389 AFRLRHSKDNFNNKFMFHHLDLHTSDRRYKQASVMVDAAVGSAGYRFGNRLAD 547
           A ++ HS  +FN K    H+  HT + +Y    ++ D   G  G+    ++AD
Sbjct: 191 AEKMLHSIKDFNQKTTVFHM--HTRNNKYDTREIVDDIFFGGTGWAEPPKIAD 241


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 419 FNNKFMFHHLDLHTSDRRYKQASVMVD---AAVGSAGYRFGNRL 541
           FN+   F   +L+TSD R++ ASV+ D   A  G   + F ++L
Sbjct: 212 FNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKL 255


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 329 SPYQYDCGYRKYDAEDSSDQGSGPSRSTAAAFL 231
           S    D G+ KYD  + SD+G   ++S A + L
Sbjct: 544 SEIDLDTGFSKYDRLEESDKGPMTAKSLAKSVL 576


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 302 DSHNHIDMDCQETHSLIQHIYL*QGIRQEAFRLRHSKDNFNNKFMFHHLD 451
           D+   +D     T SLI+++ L  G R+EA +L  ++     K    HLD
Sbjct: 26  DAIKDVDEASDHTISLIRNLLLDAGAREEAVQLIQNELEKQFKEREEHLD 75


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 221  EASSEMLLLCFYSDRIPDHCYPRHHTFDSHNHID 322
            EAS     + F++D + +  YPRH   DSH  +D
Sbjct: 1967 EASVSTPEVRFHADEVSN--YPRHVPTDSHGSLD 1998


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,942
Number of Sequences: 5004
Number of extensions: 59397
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)