Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_G06
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 189 3e-49
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 176 3e-45
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 123 2e-29
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 100 4e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 50 2e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 43 5e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 5e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 35 0.009
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 35 0.009
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 35 0.012
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.028
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 33 0.037
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.20
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.20
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.35
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.35
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.81
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.5
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 9.9
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 9.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 9.9
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 25 9.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 189 bits (461), Expect = 3e-49
Identities = 89/150 (59%), Positives = 112/150 (74%)
Frame = +1
Query: 214 FRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 393
F+ L G REMRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNVE V Y+N+ F VWD+
Sbjct: 9 FQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDV 68
Query: 394 GGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQ 573
GGQ IRP WR Y+ NT II+VVDS DR+RI + +EL ML E+EL +A+L+V ANKQ
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128
Query: 574 DMAGCLTVAEVHQALGLDALRDRTFQIFKT 663
D+ + AE+ LGL +LR R + I T
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRQWYIQAT 158
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 176 bits (428), Expect = 3e-45
Identities = 82/155 (52%), Positives = 110/155 (70%)
Frame = +1
Query: 199 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 378
G F L +EMRIL+LGLD AGKTTILYKL++ + V TIPT+GFNVE VTYKN+KF
Sbjct: 8 GFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKF 67
Query: 379 QVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVV 558
VWD+GGQ IRP WR Y+ T +I+VVDSAD +RI ++ EL ++ + E+ + +L+V
Sbjct: 68 NVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLV 127
Query: 559 LANKQDMAGCLTVAEVHQALGLDALRDRTFQIFKT 663
LANKQD+ G L+ A++ L LD L+DR + + T
Sbjct: 128 LANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPT 162
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 123 bits (297), Expect = 2e-29
Identities = 60/147 (40%), Positives = 94/147 (63%)
Frame = +1
Query: 226 LGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQT 405
L RE+R+L+LGLD AGKTTIL L +V PT GF + + + L+F +WD+GGQ
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71
Query: 406 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAG 585
++R +W+ Y+ +T+AII+VVDS D R+ ++ L +L EE+L ++VLANK D++G
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSG 131
Query: 586 CLTVAEVHQALGLDALRDRTFQIFKTS 666
L+ E+ + L + + ++IF S
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVS 158
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 99.5 bits (237), Expect = 4e-22
Identities = 50/130 (38%), Positives = 75/130 (57%)
Frame = +1
Query: 235 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIR 414
+ ++L LGLD AGKTT+L+ L+ + PT+ E++ N++F +DLGG R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 415 PYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAGCLT 594
WR Y+ + I+Y+VD D +R+ SK EL +L EELA ++L NK D G ++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 595 VAEVHQALGL 624
E+ ALGL
Sbjct: 139 EDELKAALGL 148
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.4 bits (115), Expect = 2e-07
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Frame = +1
Query: 244 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVEQVTY----KNLKFQVWDLGGQTS 408
++L++G G GK+ +L + + I TIG + + T+ K +K Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 409 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLR-EEELANAILVVLANKQDM 579
R YY II V D D+D K L + R E N +LV NK DM
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLV--GNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 42.7 bits (96), Expect = 5e-05
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +1
Query: 244 RILILGLDGAGKTTILYKLQVGEV-VTTIPTIG--FNVEQVTYKN--LKFQVWDLGGQTS 408
+ +++G G GK+ +L + E + + TIG F + N +K Q+WD GQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 409 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDM 579
R YY + V D + + + LRE +N +++++ NK D+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFD-NVGRWLKELREHADSNIVIMLVGNKTDL 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 241 MRILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQT 405
+++L++G G GK+ +L + + I TIG + + ++ K +K Q+WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 406 SIRPYWRCYYGNTDAIIYVVDSADR 480
R YY I+ + D D+
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDK 94
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.9 bits (84), Expect = 0.001
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Frame = +1
Query: 241 MRILILGLDGAGKTTILYKL-------QVGEVV-----TTIPTIGFNVEQVTYKNLKFQV 384
++I++ G G GK+ +L + QV V + I ++G +Q K +K Q+
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQI 66
Query: 385 WDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE-EELA-NAILVV 558
WD GQ R R YY + V D ++D S +EL L + +A + I VV
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD----SFEELSSWLSDIRAMAPSTICVV 122
Query: 559 LA-NKQDM 579
LA +K D+
Sbjct: 123 LAGSKSDL 130
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Frame = +1
Query: 241 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 405
++++ILG G GKT ++ + + TIG F + V K + Q+WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 406 SIRPYWRCYYGNTD--AIIY-VVDSADRDRIGISKDELVHMLREEELANAILVVLANKQD 576
+ +Y D I+Y V +S D + + E ++ ++E A ++V N+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV-GNQID 127
Query: 577 MAGCLTVAEVHQAL 618
+H+AL
Sbjct: 128 KDASKRAVSLHRAL 141
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 331 TIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDR 486
T+G + T +L+ +++D+GGQ + R W + N ++II+ V D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 35.1 bits (77), Expect = 0.009
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Frame = +1
Query: 199 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 378
G+F + R + + + ++G +GKT++ +L E TT+P+I N E V K+
Sbjct: 25 GIF-FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV----WKY 78
Query: 379 QVW--DLGGQTSIRPYWRCYYG---NTDAIIYVVDSA--DRD--RIGISKDELVHMLREE 531
W DL G + + + N A+++V++SA DRD +G+ + + R+
Sbjct: 79 GAWLVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKH 138
Query: 532 ELANAILVVLANKQDMAGCLTVAEVHQAL 618
+ + L++ NK D+ ++ Q L
Sbjct: 139 HVPH--LLIACNKFDLFTAQPAEKIQQLL 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.7 bits (76), Expect = 0.012
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Frame = +1
Query: 241 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 405
++++ILG G GKT+I+ + + TIG F ++V K + Q+WD GQ
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 406 SIRPYWRCYYGNTDAIIYVVD---SADRDRIGISKDELVHMLREEELANAILVVLANKQD 576
+ +Y D + V D S + + +DE + ++L NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 577 M 579
+
Sbjct: 129 V 129
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 33.5 bits (73), Expect = 0.028
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +1
Query: 244 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQTS 408
+++++G G GKTT + + GE I T+G V + + F VWD GQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 409 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE--EELANAILVVLANKQDM 579
+ YY I + D R I+ + H R+ N +V+ NK D+
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR----ITYKNVPHWWRDLVRVCENIPIVLCGNKVDV 125
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 33.1 bits (72), Expect = 0.037
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +1
Query: 367 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANA 546
++K ++WD GQ + YY N + I V D + +K + + R+
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAP-EGI 121
Query: 547 ILVVLANKQDMA 582
++ + NK D+A
Sbjct: 122 VIALAGNKLDLA 133
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +1
Query: 241 MRILILGLDGAGKTTILYKLQVG---EVVTTIPTIGFNVEQVTYKN--LKFQVWDLGGQT 405
+++ ++G GKT+++ G E T + F + ++ +N + F +WDLGGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 406 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 504
+ AI+++ D + + + K+
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.20
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 244 RILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVEQ---VTYKNLKFQVWDLGGQTSI 411
+I+ILG AGKT++L G PTI N V +++ +WD GQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 412 RPYWRCYYGNTDAII--YVVDSAD 477
Y +T I+ + VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.35
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +1
Query: 244 RILILGLDGAGKTT---ILYKLQVGEVVTTI-PTIGFNVEQVTYK-NLKFQVWDLGGQTS 408
++L++G G+GK++ I++ V + + TI V + NL +WD GGQ +
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 409 IRPYWRC-----YYGNTDAIIYVVDSADRD 483
+ + N +IYV D R+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 244 RILILGLDGAGKTTILYKLQVGEVV 318
R+ ILG +GAGK+T++ K+ +GEV+
Sbjct: 721 RVAILGPNGAGKSTLI-KVLIGEVI 744
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 235 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 336
+E+R++I G G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 229 GAREMRILILGLDGAGKTTILYKLQV 306
G ++++L+LG +GKTTI+ ++++
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 501 FRYSYSIPVS*VYNIYYCICVAIVTSPIRPN 409
F ++Y++ S VYN + +C + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 492 SYSIPVS*VYNIYYCICVAIVTSPIRPNTGLSPKIPHLEL 373
S S +S + N+ Y C S + PN G + HL+L
Sbjct: 697 SISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDL 736
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 253 ILGLDGAGKTTILYKLQVGEVVTTIPTIGF 342
I+ LDG G T +L K V PT F
Sbjct: 275 IMALDGVGTTALLVKASVHRDGALFPTFPF 304
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 232 AREMRILILGLDGAGKTTI 288
++ I+++G+ GAGKTTI
Sbjct: 861 SKNASIILIGMRGAGKTTI 879
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 663 SLKDLEGSIAQGVQAQGLVYLGYCQTSGHVLF 568
++K L+G + VY G+ T G VLF
Sbjct: 39 AVKFLQGLTTNKITLDNPVYTGFLNTQGRVLF 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,522
Number of Sequences: 5004
Number of extensions: 57471
Number of successful extensions: 163
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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