Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_G05
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 69 5e-12
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 69 5e-12
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 49 4e-06
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 49 4e-06
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 47 2e-05
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 2.8
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 3.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +2
Query: 47 MASGVTVSDACKXTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 220
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 221 -GGTGECRYGLFDFEYTHQCQGHVG 292
ECRY D E T Q QG G
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEG 85
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +3
Query: 246 ACLTLNTRTSARGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--Y 419
A + + +G S K+ + +CPD A V+++MLY+SS ALK SL G++
Sbjct: 70 AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQ 128
Query: 420 IQATDLSEASQEAVEEKLRATDR 488
+QA+++S+ +++V+ L + R
Sbjct: 129 VQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +2
Query: 47 MASGVTVSDACKXTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 220
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 221 -GGTGECRYGLFDFEYTHQCQGHVG 292
ECRY D E T Q QG G
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEG 85
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +3
Query: 246 ACLTLNTRTSARGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--Y 419
A + + +G S K+ + +CPD A V+++MLY+SS ALK SL G++
Sbjct: 70 AAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQ 128
Query: 420 IQATDLSEASQEAVEEKLRATDR 488
+QA+++S+ +++V+ L + R
Sbjct: 129 VQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 270 TSARGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 446
T +R + SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE
Sbjct: 90 TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149
Query: 447 SQEAVEEKL 473
S + + KL
Sbjct: 150 SHKELLNKL 158
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +2
Query: 47 MASGVTVSDACKXTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 184
M+SGV V + +++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 185 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 268
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 270 TSARGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 446
T +R + SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE
Sbjct: 90 TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149
Query: 447 SQEAVEEKL 473
S + + KL
Sbjct: 150 SHKELLNKL 158
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +2
Query: 47 MASGVTVSDACKXTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 184
M+SGV V + +++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 185 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 268
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +3
Query: 288 SEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAV 461
SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V
Sbjct: 147 SEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSV 202
Query: 462 EEKLRATDR 488
+ L + R
Sbjct: 203 KSDLMSNQR 211
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 270 TSARGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEA 446
T +R + SK K+ + CPD A +KKKM+Y+SS A+K SL G Q +D SE
Sbjct: 90 TCSRVGAGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEM 149
Query: 447 SQE 455
S +
Sbjct: 150 SHK 152
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +2
Query: 47 MASGVTVSDACKXTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 184
M+SGV V + +++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 185 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 268
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 261 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 160
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 261 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 160
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 446 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 348
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 557 RQGRSVGERVRFRRELVCKCC 495
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,932
Number of Sequences: 27780
Number of extensions: 339332
Number of successful extensions: 1173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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