Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F24
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 110 1e-24
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 108 5e-24
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 108 6e-24
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 67 2e-11
11_01_0311 + 2322511-2323527 31 1.6
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 30 2.1
09_06_0066 + 20641144-20641459,20642899-20643290,20643379-206438... 28 8.3
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 110 bits (265), Expect = 1e-24
Identities = 53/120 (44%), Positives = 74/120 (61%)
Frame = +1
Query: 490 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 669
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 670 DVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPDMGTGERKMSW 849
VP+GGAK GI P E S ELE++TR F ++ +G+ DVPAPDMGT + M+W
Sbjct: 95 AVPYGGAKGGIGCTPGELSRSELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAW 152
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 108 bits (260), Expect = 5e-24
Identities = 51/120 (42%), Positives = 76/120 (63%)
Frame = +1
Query: 490 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 669
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94
Query: 670 DVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPDMGTGERKMSW 849
++P+GGAK GI +P + S ELE++TR F ++ +G+ DVPAPDMGT + M+W
Sbjct: 95 NIPYGGAKGGIGCSPGDLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAW 152
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 108 bits (259), Expect = 6e-24
Identities = 52/120 (43%), Positives = 73/120 (60%)
Frame = +1
Query: 490 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 669
++++ + +D G +G+R QH R P KGGIR+ +V DEV AL+ LMT+K A
Sbjct: 35 IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94
Query: 670 DVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPDMGTGERKMSW 849
+P+GGAK GI P E S ELE++TR F ++ +G DVPAPDMGT + M+W
Sbjct: 95 AIPYGGAKGGIGCAPGELSTSELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAW 152
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 66.9 bits (156), Expect = 2e-11
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Frame = +1
Query: 403 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 579
E + S P+ K + IL +L+EP + + P D G+ + G+R Q S P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278
Query: 580 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPXEYSEHELEKITRRF 759
+GG+RF +T K L+ T K A GGA G +P SE E+ + + F
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSF 338
Query: 760 XLELAKKGSLGLAWDVPAPDMGTGERKMSW 849
EL + LG D PA D+G G R+M +
Sbjct: 339 MDELYR--YLGPDQDFPAEDVGVGPREMGY 366
>11_01_0311 + 2322511-2323527
Length = 338
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 650 PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSLVVSPL-NLPKKDHWAWRGMSPLLTWV 826
PSS R TC S+ S S P + +++++ +L+ +P L + W + P L++
Sbjct: 36 PSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQLRLTWGHSPLGPTLSFA 95
Query: 827 PA 832
P+
Sbjct: 96 PS 97
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +1
Query: 346 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 525
H F + V ED + + + +E K+KV + E + ++ ++ + G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701
Query: 526 DYEMILGYRAQHSTHRTPTKGGIRFSTD 609
Y + + + S TPT G FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729
>09_06_0066 +
20641144-20641459,20642899-20643290,20643379-20643829,
20643985-20644046
Length = 406
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 737 WKRSLVVSPLNLPKKDHWAWRGMSPLLTW 823
W R V + L K D WRG+ + TW
Sbjct: 336 WSRRARVVSVQLEKSDGGEWRGVKSIKTW 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,000,061
Number of Sequences: 37544
Number of extensions: 539402
Number of successful extensions: 1342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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