Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F24
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            212   4e-55
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   9e-13
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               69   5e-12
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               69   5e-12
SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)       37   0.024
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)                      35   0.074
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               34   0.17 
SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           31   1.2  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         31   1.2  
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29)                 29   3.7  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  212 bits (517), Expect = 4e-55
 Identities = 101/182 (55%), Positives = 131/182 (71%), Gaps = 4/182 (2%)
 Frame = +1

Query: 316 IPTSANPKFFHMVEYFFHRACQVVEDKLVE--DLKSRTP--IEEKKKKVAGILKLMEPCD 483
           + +   P F  M   FF +A   VE +L+   D   + P   E+KK ++ GIL +M+PC 
Sbjct: 38  VESDTEPSFTEMCAGFFDQARTYVEHRLLTRPDPPGKIPEKFEDKKHRIKGILDVMKPCQ 97

Query: 484 HILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCA 663
            +L + FP++ D+G+Y+++ GYRAQHS HR+P KGGIR+S DV  DEV+AL+ LMTFKCA
Sbjct: 98  DVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCA 157

Query: 664 CVDVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPDMGTGERKM 843
            VDVPFGGAK GIKI+P ++S  ELEKITRRF +ELAKK  +G   DVPAPDMGTGER+M
Sbjct: 158 VVDVPFGGAKGGIKIDPSQHSVTELEKITRRFTVELAKKHFIGPGLDVPAPDMGTGEREM 217

Query: 844 SW 849
           SW
Sbjct: 218 SW 219


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 38/129 (29%), Positives = 68/129 (52%)
 Frame = +1

Query: 463 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSA 642
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V    +K L  
Sbjct: 379 RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFLGF 437

Query: 643 LMTFKCACVDVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPDM 822
               K +   +P GG K G   +P   +++E+ +  + F LEL +   +G   D+PA D+
Sbjct: 438 EQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEVMRFCQSFMLELQR--HIGPDTDIPAGDI 495

Query: 823 GTGERKMSW 849
           G G R++ +
Sbjct: 496 GVGGREIGF 504


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
 Frame = +1

Query: 451 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 627
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V    +
Sbjct: 47  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 105

Query: 628 KALSALMTFKCACVDVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDV 807
           K L      K +   +P GG K G   +P   S+HE+    + F  EL +   +G   DV
Sbjct: 106 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEVMSFCQSFMTELQR--HIGPNTDV 163

Query: 808 PAPDMGTGERKMSW 849
           PA D+G G R++ +
Sbjct: 164 PAGDIGVGGREIGF 177


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
 Frame = +1

Query: 451 AGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEV 627
           A IL +++EP + ++  + P R DS +  +  G+R + ++   P KGG+RF   V    +
Sbjct: 85  ANILDRIVEP-ERVVIFRVPWRDDSNNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGIL 143

Query: 628 KALSALMTFKCACVDVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDV 807
           K L      K +   +P GG K G   +P   S+HE+    + F  EL +   +G   DV
Sbjct: 144 KFLGFEQVLKNSLTTLPLGGGKGGSDFDPKGKSDHEVMSFCQSFMTELQR--HIGPNTDV 201

Query: 808 PAPDMGTGERKMSW 849
           PA D+G G R++ +
Sbjct: 202 PAGDIGVGGREIGF 215


>SB_14929| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=6.4e-08)
          Length = 131

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 463 KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 636
           +++EP + +L  + P   D G+ ++  GYR + ++   P KGG+RF   V    +K L
Sbjct: 71  RIVEP-ERVLSFRVPWLDDKGEVQVNRGYRVEFNSSIGPYKGGLRFHPSVNLGILKFL 127


>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
          Length = 582

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +1

Query: 277 TYASHEIPDKLKDIPTSANPKFFHMVEYFFHR--ACQVVEDKLVEDLKSRTPIEEKKKKV 450
           TY+  E+ D L++  +S     FH+  +  HR     +++ + V+D K +TP  E KK  
Sbjct: 334 TYSQSELMD-LRNNSSSLTD--FHI--FCLHRWLPANLLKPEAVKDAKKQTPDLEFKKWT 388

Query: 451 AGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRT 576
            GIL        I E+  PL+R+  +      Y+AQ   H T
Sbjct: 389 KGILDHAGTVSAISEVIEPLKRNLTELFKAQDYQAQPLDHLT 430


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 208 SVQNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSA 330
           +V  +A+NT   ++   +N CCRT  +  I    K +PT A
Sbjct: 251 TVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCKTVPTKA 291


>SB_47331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 378 TGSVEKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSWYDSEHCIEGF 220
           TG+V   +YH  +L I +  NI    W     VC   D   ++Y S++ I+ F
Sbjct: 203 TGAVYTDYYHDSDLTIGSVLNI----WGRKFQVCDCDDFTKAYYKSKYGIDSF 251


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 640 LITP*LHLWLRPLRIEYLLWLESCVWNVVRDSLISFRN--RQNRASEEIESQ 491
           +I P    WL  L I  LLW   CV+ ++RDS    ++       S EI+S+
Sbjct: 414 VILPEFAYWLCLLTISLLLWQPLCVYTLLRDSHTMLKSPLASQLGSREIDSR 465


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 745  ITRRFXLELAKKGSLGLAWDVPAPDMGTGERKMSWDR 855
            +T +F ++L +  ++GL WD P PD    E+++ W R
Sbjct: 1168 VTIKFRIDLQELWAIGLPWDEPLPD----EQQLKWIR 1200


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +3

Query: 351 GRIFFPPSLSSCRRQAC*RFEVKDTH*RE-EKESSRYSKTYGTMRSHS*DSISSEARFWR 527
           GR F P S++   RQ   R+E      RE E E     K     +      +    +F R
Sbjct: 214 GRDFGPHSINVHERQCAKRWEANKKQQREIEDEKKAREKKREPWKEPVFPPLRRHEQFTR 273

Query: 528 LRNDIRLSRTTFHTQDSNQRRYSI 599
             +DIR  R + H +   +  YS+
Sbjct: 274 SLHDIRAKRDSLHLEFEKELLYSL 297


>SB_37974| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-29)
          Length = 512

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 833 SPVPMSGAGTSHARPNDPFLASSRXKRRVIFSSSCSEYSXGLILIPALAPPKGTSTHA 660
           +P P+S   T ++  ND   A +     V+F  S + +  G I I A   PK   +HA
Sbjct: 410 TPAPLSSGSTPNSIRNDKKAAKTFALITVVFLLSFASHMAGNINIIAEGRPKYMGSHA 467


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 QRYSYKCESEVLPHGRIFFPPSLSSC 386
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 710 LILIPALAPPKGTSTHAHLKVI-KADNALTSSLVTSVENRIPPLVGVLCVECC---AR*P 543
           L+L  ++AP   TS    L V+  ADNAL SSL++  +  + P+               P
Sbjct: 165 LLLGTSVAPTTSTSLVPPLDVVCHADNALVSSLMSDCDQAMSPVESAFATSVSTTPTMSP 224

Query: 542 NIIS*SPES 516
           ++ S SP S
Sbjct: 225 SLFSYSPSS 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,171,115
Number of Sequences: 59808
Number of extensions: 606654
Number of successful extensions: 1423
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)