Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F24
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 235 2e-62
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 33 0.35
AF000299-10|AAC47986.1| 338|Caenorhabditis elegans Seven tm rec... 30 1.8
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 9.8
AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassi... 28 9.8
AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical ... 28 9.8
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 235 bits (576), Expect = 2e-62
Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 1/190 (0%)
Frame = +1
Query: 283 ASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKK-VAGI 459
A ++ D+ K + NP F+ MV+++F++ +V+ KL E+LKS + ++ KK V+GI
Sbjct: 24 AHSQVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNLVSGI 83
Query: 460 LKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALS 639
L ++P + +L I FP+RRD+G++E+I +RAQHS HRTPTKGGIR+S DV DEVKALS
Sbjct: 84 LGAIKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCEDEVKALS 143
Query: 640 ALMTFKCACVDVPFGGAKAGIKINPXEYSEHELEKITRRFXLELAKKGSLGLAWDVPAPD 819
ALMT+KCA VDVPFGGAK G+KI+P +Y+++E+EKITRR +E AKKG LG DVPAPD
Sbjct: 144 ALMTYKCAVVDVPFGGAKGGVKIDPKQYTDYEIEKITRRIAIEFAKKGFLGPGVDVPAPD 203
Query: 820 MGTGERKMSW 849
MGTGER+M W
Sbjct: 204 MGTGEREMGW 213
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 32.7 bits (71), Expect = 0.35
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = +1
Query: 202 KNSVQNEAL--NTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRA 375
++ V+ E L N F + G C S I + K AN FF + E F+R
Sbjct: 443 EDDVEQEELDENVSFSTVSGGETFSCED-KSRPITSEEK----KANQMFFLLDETAFNR- 496
Query: 376 CQVVEDKLVEDLKSR--TPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDY 531
V DLKSR +++ +++A IL++ME H+ +R +GD+
Sbjct: 497 -NATRYMSVGDLKSRYGDKVDDVAEEIAVILRIMEKLWHVFMPDSYIRTMTGDF 549
>AF000299-10|AAC47986.1| 338|Caenorhabditis elegans Seven tm
receptor protein 162 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 570 VCGMLCAIA*YHFVIARIAPQRKLNLKNVIAWF 472
+CG+L + HF+ A QRK NLK W+
Sbjct: 95 ICGVLMPMFVVHFIFRYFAMQRKGNLKYFEGWY 127
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 157 WWLIMLSTTIGLGIGSPYTY 98
WW I+ TTIG G +P+TY
Sbjct: 368 WWAIVTMTTIGYGDITPHTY 387
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 424 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 543
PIE +++ + K E CDH+++ Q L R S E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 424 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 543
PIE +++ + K E CDH+++ Q L R S E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 424 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 543
PIE +++ + K E CDH+++ Q L R S E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482
>AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassium
channel protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 166 DAAWWLIMLSTTIGLGIGSPYTY 98
DA WW ++ TTIG G P T+
Sbjct: 214 DALWWGVITMTTIGYGDVVPQTW 236
>AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical
protein Y54G9A.3 protein.
Length = 621
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 166 DAAWWLIMLSTTIGLGIGSPYTY 98
DA WW ++ TTIG G P T+
Sbjct: 255 DALWWGVITMTTIGYGDVVPQTW 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,868,517
Number of Sequences: 27780
Number of extensions: 459696
Number of successful extensions: 1242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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