Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F23
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    31   0.16 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.66 
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    29   0.66 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    29   0.88 
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   1.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   2.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.7  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   4.7  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   4.7  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    25   8.2  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    25   8.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.2  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +3

Query: 189 DVDDGNYNSKFKQTPCS---IPGCKHIADTL 272
           DV D  Y SK + TPCS   +PGC    D L
Sbjct: 377 DVMDSQYGSKIEDTPCSLHNVPGCFSCFDRL 407


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 282 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 461
           +NH    H  SC+ C +   +   L  H+  +  +      E++ +Y C +E CK+ F  
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTL-----EERKTYHCPMEGCKKSFTR 249

Query: 462 TADRLDH 482
           ++    H
Sbjct: 250 SSALKKH 256


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 459 NTADRLDHCVREHRIPKDFR-FERQKKDKN-KMPNAMDVDEAKSNKFHLNNSKQKTFSKN 632
           N  D +++      + K    +E   K+K  K+PN  DVD  K  K   +++      K+
Sbjct: 78  NALDEIEYPEFSKTLKKHLEAYELALKEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKD 137

Query: 633 KYAGKKFTSD-KKSRDETNMDCSMEDLK 713
           +   ++   D  ++  E N+D  +EDL+
Sbjct: 138 ELEEERIAEDIAQNEVEQNID-DVEDLE 164


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 507 KDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKS 671
           KD    R+K  K +  +A  ++ + S+K HL+ S  + FSK+    +     KKS
Sbjct: 581 KDIERRREKVAKKRNSSASKLEMSDSSKHHLSRSSSR-FSKSHIISQLHNHLKKS 634


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 501 IPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAG-KKFTSDKKSRD 677
           + + F+    K  +N   + ++     ++KFH  + ++K+F    YAG +KF  D   R+
Sbjct: 10  VTRGFKGLESKSVENNKDHIVENSSPIASKFHEFDEQKKSFEIINYAGHEKFVDDITERE 69

Query: 678 ET 683
            +
Sbjct: 70  SS 71


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 234 CSIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQENHDSYFAVM 401
           C+ P C   + T  ++   +  TH     +SC+ C +       L+ H+Q+ H     + 
Sbjct: 28  CTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLS 86

Query: 402 AEKKPSYCCYIEEC 443
             +  +  C++  C
Sbjct: 87  ERRMLNASCFLGFC 100


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
 Frame = +3

Query: 234  CSIPGCKHIADTLLDYENHYNATHR-YSC-------AQCKKVLPSPHFLDLHIQENHDSY 389
            C   GC     +L ++  H    H   SC       A C  VLPS  F ++H++ + ++ 
Sbjct: 1002 CQWEGCLANLHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSEEF-EMHLRGHLNNI 1060

Query: 390  FAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKN 545
                        C +  CK+ F+N  D   H    H +P  F  E   K +N
Sbjct: 1061 ---------RLNCEVSNCKKCFSNYEDMFKHLQHSH-LPFKFTPESFIKIRN 1102


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 489  REHRIPKDFRFERQKKDKNK-MPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDK 665
            R H++ + F F R KKD  K +P+ ++    K  K  L+  + K + + K  G  F   +
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVE----KVIKCPLSGLQLKLYQQMKKHGMLFVDGE 1139

Query: 666  KSR 674
            K +
Sbjct: 1140 KGK 1142


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/92 (18%), Positives = 37/92 (40%)
 Frame = +3

Query: 432  IEECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSK 611
            I+  K+K    A+       +    +  + ERQK  +  +       +A  +   L++ +
Sbjct: 876  IQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDE 935

Query: 612  QKTFSKNKYAGKKFTSDKKSRDETNMDCSMED 707
            +K   K K   +K    K  ++ ++   S +D
Sbjct: 936  EKQSGKKKKKDRKKRKSKSKQESSDSGVSEDD 967


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 441 ILLCSSNTKVSFRPSQQNTNRGSPVCAGLRNAAKAEPSCI--ERTSTCASR 295
           I  C+  +  +     ++ N GS  C+   ++   +PSC   E+ S C+S+
Sbjct: 201 ICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSK 251


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 465 ADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAG 644
           A++ +  + E  +PKD   E+  KDK K       ++ K     +++S      K + AG
Sbjct: 182 AEQAEEEILEKPVPKDEVAEKHSKDKLKKE-----EKEKKTAVDVSDSVNGKKRKTEPAG 236

Query: 645 KKFTSDKKSR 674
           +   ++KKS+
Sbjct: 237 EGEQTEKKSK 246


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
 Frame = +3

Query: 366 IQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHC-VREHR--IPKD----FRFE 524
           I   H SY   +  K+       EE K+   N  + L    ++ +R  I K+    F F 
Sbjct: 116 ISTTHTSYIPTLLAKQEEN----EETKETTTNKNESLPGTSLKRNREIIEKEERSSFHFR 171

Query: 525 RQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRDET 683
            + K+ +K+P   + +  KS +   +N  +  F K K    +  S  K  D++
Sbjct: 172 VKPKNLDKVPKLAENEGNKSLESKESNENKVVFKKKKSGKLRTKSSLKEYDQS 224


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 206  ISIVHIVNSKSSRLFIMYKQNIIKHPFSYSIFF 108
            +S++ ++ +  +R   M  QN+I + FSY+I F
Sbjct: 903  LSLLDVIQTIRTRYHGMNCQNLIHYSFSYAIEF 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,618
Number of Sequences: 5004
Number of extensions: 71620
Number of successful extensions: 241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)