Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F23
         (717 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    33   0.012
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         28   0.33 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    26   1.0  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    25   3.1  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   3.1  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   4.1  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    24   5.4  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 32.7 bits (71), Expect = 0.012
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 6/150 (4%)
 Frame = +3

Query: 249 CKHIADTLLDYENH---YNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPS 419
           C + + ++   E+H   +     Y C QC +       L  H+   H+  +     K  +
Sbjct: 360 CPYASISMRHLESHLLLHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVAPTPKAKT 419

Query: 420 YCCYIEECKQKFNNTADRLDHCVR---EHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNK 590
           + C    CK+ F +  + + H      E  + K+    R+ + K K+    + +E    +
Sbjct: 420 HIC--PTCKRPFRHKGNLIRHMAMHDPESTVSKEMEALREGRQK-KVQITFE-EEIYKGE 475

Query: 591 FHLNNSKQKTFSKNKYAGKKFTSDKKSRDE 680
                 + +   +++Y G     D++  D+
Sbjct: 476 EDYEGEEDEEDEEDEYEGDDTEEDEEDEDD 505


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 178 SLVGCLSCINRTSSSIRFPTPYSLSFSNRDFAFI 77
           +L G + C NR  + I +   Y +S S R+F FI
Sbjct: 540 ALCGLIFCNNRAMARILYVLLYEVSRSQREFEFI 573


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 387 YFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPK 509
           Y  V+ + + S+  ++E C  K   TA  L   +R H  PK
Sbjct: 753 YLGVVIDNQLSWKSHVEYCTTKALRTAKALGCLMRNHSGPK 793


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 477 LICRRCC*ISVYILLCSSNTKVSFRPSQQNTNRGSPV 367
           ++C  CC        CS N    F P+ Q+ NR  PV
Sbjct: 36  MLCEVCC-----SRKCSRNGSPKFAPAVQSKNRMPPV 67


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 312  SCA-QCKKVLPSPHFLDLHIQENHDS 386
            +CA QCK    +P ++D+H ++  DS
Sbjct: 1988 TCASQCKATEKAPKYVDVHCRDATDS 2013


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 321 ERTSTCASRCNGFRN 277
           E+  TCA RCN F++
Sbjct: 672 EKCPTCAGRCNEFKH 686


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 249 CKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHI 368
           C   A  LL  +N     H  + ++   +   PHF D+H+
Sbjct: 28  CTDYAKELLPVKNETARVHSPAESEGGNLRKYPHFQDIHV 67


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,901
Number of Sequences: 2352
Number of extensions: 17173
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)