Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F20
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 91 2e-19
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 43 4e-05
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.1
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 27 3.1
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 4.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 4.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.2
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 9.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 9.5
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 90.6 bits (215), Expect = 2e-19
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Frame = +1
Query: 253 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 429
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 430 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 588
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 589 IVKPDNTYEVLIDNXKVESGDL 654
IVKPD T+EV I+ V G L
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSL 228
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 42.7 bits (96), Expect = 4e-05
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 7/183 (3%)
Frame = +1
Query: 127 VFFEEXFPDD--SWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL- 297
VF E+ +D +W S W K+ G + L S D+ GL T + + + L
Sbjct: 32 VFSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILI 88
Query: 298 SRKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 471
S P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 89 SNLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVK 147
Query: 472 ICGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNXKVES 645
CG I SY GK HL + T +YTL+++ + T + D V +
Sbjct: 148 KCGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYT 206
Query: 646 GDL 654
GD+
Sbjct: 207 GDV 209
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +1
Query: 382 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 549
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 550 R--CKDDVYTH 576
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 14 RLIRGLSFVXSGGPVHRKXK 73
+++RGL FV S G +HR K
Sbjct: 124 QILRGLKFVHSAGVIHRDLK 143
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 394 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 573
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 574 HLYTLIVKP 600
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 287 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 192
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 139 EXFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 282
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 311 LNLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 150
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +1
Query: 265 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 438
KT Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 223 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNE 327
A F S E KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 208 KFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQ 348
K LT +S+ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 238 SDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKL 417
++ ED++GL SED + +A + F +S+ + L + +++ + L+ F+ +L
Sbjct: 236 NESEDEEGLSLSEDGKKFA-NIDFGDYSSSEEFLKEHLNILADEE-ESDAILLEAFNAEL 293
Query: 418 EQK 426
E K
Sbjct: 294 EGK 296
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 287 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNXSS 135
N ASS V + S + NF F N P SL Q L+ S+ S+
Sbjct: 106 NFASSSVTSAPTQSSHISNFTNSQKYFANDLPN-SLTDQPLAQPSASQRST 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,104
Number of Sequences: 5004
Number of extensions: 58192
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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