Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F19
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.4  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 704 VQSIIVVAFVRRCESPILVRVFHIGESLFNV 612
           + +I+ V  V   +SP L   FH+    FNV
Sbjct: 576 LNAIVEVVLVDEVQSPNLSHPFHLHGYAFNV 606


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 399 QPPRHYTERRDYYQNQQDLIP 461
           Q  R+Y    D YQ+ Q L+P
Sbjct: 172 QENRYYNNSPDQYQSYQILLP 192


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 645 TNQNWGFATSNESDYDDGLDGKRPISFDKIRPKDVI 752
           +N N  F+  N    D G     PI+  K +PK V+
Sbjct: 124 SNGNLKFSIDNILKADFGRRITDPINIRKCKPKTVV 159


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 406 PDIIPREETTIKTN 447
           PDI  REE  +K N
Sbjct: 152 PDIFMREEVAVKIN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,916
Number of Sequences: 336
Number of extensions: 2646
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)