Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F19
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547...    29   3.2  
07_03_0107 - 13470054-13470126,13471723-13471851,13472000-134720...    29   5.5  

>02_05_0024 +
           25152090-25153151,25153232-25154145,25154499-25154709,
           25154757-25154921
          Length = 783

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 97  GNCC*CERMKERTNVRANDTVXATRLAXAGR 5
           GN   C   K R  VRA D V A RLA  G+
Sbjct: 249 GNASPCAAAKGRGKVRAEDLVEAARLANGGQ 279


>07_03_0107 -
           13470054-13470126,13471723-13471851,13472000-13472086,
           13472480-13472524,13473121-13473240,13474010-13474086,
           13474319-13474407,13474620-13474693,13475177-13475243,
           13476427-13476478,13477272-13477307
          Length = 282

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 42  SFARTXVRSFILSHQQQFPXLQLCLVSGKRVCCVCRN 152
           S  R  +RS +  H  QFP L+   V G  +   C +
Sbjct: 174 SLQREVIRSMVKKHGSQFPVLESGSVHGNEISLTCES 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,888
Number of Sequences: 37544
Number of extensions: 305255
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)