Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F19
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               30   2.4  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               29   5.6  
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 384 YGYDYQPPRHYTE-RRDYYQNQQDLIPQIF 470
           Y Y Y+ PRHYTE R + + N  D+   +F
Sbjct: 750 YSYLYELPRHYTECRTELWLNNTDMRGSVF 779


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 YPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQ 440
           Y TLN+  R+     Y Y+YQ     +   DYYQ
Sbjct: 413 YSTLNQEHRQNRNDYYSYNYQRASSESRSFDYYQ 446


>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 381 LVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAV 259
           +VAIS   V + SGNL +  S  V   LQN  S+F    AV
Sbjct: 24  VVAISFLAVAIFSGNLLVIVSVAVNRRLQNKTSVFITSLAV 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,393
Number of Sequences: 59808
Number of extensions: 362590
Number of successful extensions: 1096
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)