Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F17
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical pr... 222 1e-58
U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical pr... 222 1e-58
U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily ass... 220 7e-58
Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical pr... 217 6e-57
U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical pr... 149 2e-36
U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical pr... 133 1e-31
U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily as... 130 5e-31
AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical... 85 3e-17
AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical... 83 1e-16
U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical pr... 80 1e-15
U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 32 0.26
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 32 0.26
AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical... 28 4.2
U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical p... 28 5.5
U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical p... 28 5.5
AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical... 27 7.3
AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical ... 27 7.3
>U41009-4|AAA82280.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.1a protein.
Length = 404
Score = 222 bits (543), Expect = 1e-58
Identities = 99/127 (77%), Positives = 114/127 (89%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 375
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 376 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGL 555
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL QQSP IAAGVH +++ ++VGAGD G+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGI 125
Query: 556 MFGYATD 576
MFGYATD
Sbjct: 126 MFGYATD 132
>U41009-2|AAA82279.1| 404|Caenorhabditis elegans Hypothetical
protein C06E7.3a protein.
Length = 404
Score = 222 bits (543), Expect = 1e-58
Identities = 99/127 (77%), Positives = 114/127 (89%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 375
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 376 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGL 555
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL QQSP IAAGVH +++ ++VGAGD G+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGI 125
Query: 556 MFGYATD 576
MFGYATD
Sbjct: 126 MFGYATD 132
>U56963-9|AAB38126.2| 404|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform a protein.
Length = 404
Score = 220 bits (537), Expect = 7e-58
Identities = 99/127 (77%), Positives = 113/127 (88%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 375
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 376 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGL 555
DYQ +VR +K IGYDDSSKGFDYKTC+V++AL QQSP IAAGVH +++ +VGAGD G+
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHVDKDIADVGAGDQGI 125
Query: 556 MFGYATD 576
MFGYATD
Sbjct: 126 MFGYATD 132
>Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical
protein C49F5.1 protein.
Length = 403
Score = 217 bits (529), Expect = 6e-57
Identities = 98/129 (75%), Positives = 114/129 (88%)
Frame = +1
Query: 190 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 369
S FLFTSESV EGHPDKMCDQISDA+LDAHL QDP+AKVACET+TKTGMV+LCGEITSKA
Sbjct: 3 SKFLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKA 62
Query: 370 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDX 549
VDYQ +VR ++ IG+ DSS GFD+KTC+V++AL QQSP IAAGVH N++ E+VGAGD
Sbjct: 63 VVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGVHVNKDGEDVGAGDQ 122
Query: 550 GLMFGYATD 576
G+MFGYATD
Sbjct: 123 GIMFGYATD 131
>U41009-5|AAO44915.1| 173|Caenorhabditis elegans Hypothetical
protein C06E7.1d protein.
Length = 173
Score = 149 bits (360), Expect = 2e-36
Identities = 67/81 (82%), Positives = 73/81 (90%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 375
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVACET+TKTGM++LCGEITSKA V
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVV 65
Query: 376 DYQKVVRETVKHIGYDDSSKG 438
DYQ +VR +K IGYDDSSKG
Sbjct: 66 DYQVLVRNVIKKIGYDDSSKG 86
>U41009-3|AAO44916.1| 353|Caenorhabditis elegans Hypothetical
protein C06E7.3b protein.
Length = 353
Score = 133 bits (321), Expect = 1e-31
Identities = 58/81 (71%), Positives = 71/81 (87%)
Frame = +1
Query: 334 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHX 513
M++LCGEITSKA VDYQ +VR +K IGYDDSSKGFDYKTC+V++AL QQSP IAAGVH
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHV 60
Query: 514 NRNDEEVGAGDXGLMFGYATD 576
+++ ++VGAGD G+MFGYATD
Sbjct: 61 DKDSDDVGAGDQGIMFGYATD 81
>U56963-10|AAM97949.1| 353|Caenorhabditis elegans Temporarily
assigned gene nameprotein 32, isoform b protein.
Length = 353
Score = 130 bits (315), Expect = 5e-31
Identities = 58/81 (71%), Positives = 70/81 (86%)
Frame = +1
Query: 334 MVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHX 513
M++LCGEITSKA VDYQ +VR +K IGYDDSSKGFDYKTC+V++AL QQSP IAAGVH
Sbjct: 1 MIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVHV 60
Query: 514 NRNDEEVGAGDXGLMFGYATD 576
+++ +VGAGD G+MFGYATD
Sbjct: 61 DKDIADVGAGDQGIMFGYATD 81
>AL110479-10|CAD56249.1| 345|Caenorhabditis elegans Hypothetical
protein Y105C5B.12a protein.
Length = 345
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +1
Query: 415 GYDDSSKGFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGLMFGYATD 576
GY D GFDYKTC+V++AL QQSP IAAGVH +++ ++VGAGD G+MFGYATD
Sbjct: 20 GYFDYRNGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATD 73
>AL110479-11|CAB54357.1| 363|Caenorhabditis elegans Hypothetical
protein Y105C5B.12b protein.
Length = 363
Score = 83.0 bits (196), Expect = 1e-16
Identities = 47/86 (54%), Positives = 53/86 (61%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 375
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVAC KT VL+ E S
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACGFDYKTCNVLVALEQQSPEIA 65
Query: 376 DYQKVVRETVKHIGYDDSSKGFDYKT 453
V +++ +G D F Y T
Sbjct: 66 AGVHVDKDS-DDVGAGDQGIMFGYAT 90
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 3/59 (5%)
Frame = +1
Query: 409 HIGYDDSSK---GFDYKTCSVMLALXQQSPNIAAGVHXNRNDEEVGAGDXGLMFGYATD 576
H+ D +K GFDYKTC+V++AL QQSP IAAGVH +++ ++VGAGD G+MFGYATD
Sbjct: 33 HLAQDPHAKVACGFDYKTCNVLVALEQQSPEIAAGVHVDKDSDDVGAGDQGIMFGYATD 91
>U41009-7|AAN84884.1| 51|Caenorhabditis elegans Hypothetical
protein C06E7.1c protein.
Length = 51
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 312
FLFTSESV EGHPDKMCDQISDA+LDAHL QDP AKVAC
Sbjct: 6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVAC 44
>U41009-6|AAK68167.2| 84|Caenorhabditis elegans Hypothetical
protein C06E7.1b protein.
Length = 84
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 196 FLFTSESVGEGHPDKMCDQ 252
FLFTSESV EGHPDKMCDQ
Sbjct: 6 FLFTSESVSEGHPDKMCDQ 24
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 402
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 402
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 AILDAHLNQDPDAKVACETITKTGM-VLLCGEITSKANVDYQKVVRET 402
A +D ++ Q P+ +C + G VL+ E +KAN+DY ++ +ET
Sbjct: 290 ACIDENMEQPPEGDWSCPHCEEHGPDVLIVEEEPAKANMDYCRICKET 337
>AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical
protein Y59A8B.13 protein.
Length = 417
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 362 PKLTWIIKKLCAKRSNIL---VMMIRPKALITRH 454
PK+ W ++K+C K+ +I + I P+ L+T H
Sbjct: 253 PKIVWHLEKMCNKKEDISRGNPVSIPPQRLLTHH 286
>U28991-14|AAA68388.1| 352|Caenorhabditis elegans Hypothetical
protein F08F8.1 protein.
Length = 352
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 435 FGRIIITNMFDRFAHNFLIIHVSFGCDFATQKHHTGFSYGF 313
FGR D NF H FG HH GF +GF
Sbjct: 149 FGRPFGRRGMDHHGFNFHRHHHPFGAFHGFGGHHHGFGHGF 189
>U28991-13|AAA68387.1| 281|Caenorhabditis elegans Hypothetical
protein F08F8.5 protein.
Length = 281
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 435 FGRIIITNMFDRFAHNFLIIHVSFGCDFATQKHHTGFSYGF 313
FGR D NF H FG HH GF +GF
Sbjct: 223 FGRPFGRRGMDHHGFNFHRHHHPFGAFHGFGGHHHGFGHGF 263
>AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical
protein F22E5.1 protein.
Length = 370
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 326 KPVWCFCVAKSHPKLTWIIKKLCAKRSNILVMMIRPKALITR 451
KP+ + K HP + W+ L K+ N++ +M++ A T+
Sbjct: 197 KPLLLAELLKEHPNIWWMDAHLSVKKPNMVELMMKEVAEKTK 238
>AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical
protein T28F2.2 protein.
Length = 175
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 371 TWIIKKLCAKRSNILVMMIRPKALITRHAV*CSH 472
+W+++++C SN+ V+ + H V C H
Sbjct: 5 SWLLEEICTNFSNLTVLKFKELCNRASHLVLCGH 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,156
Number of Sequences: 27780
Number of extensions: 311468
Number of successful extensions: 778
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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