Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F14
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.5  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   6.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   6.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.3  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 176  SSLSVFIYYLLPTQYSFNTLITSSLF-KLEKKTA 274
            +SL++ +YY  P+ Y+F  L+ + +F K+ +K A
Sbjct: 1400 ASLTMHLYYTEPSNYAFMNLLKAGVFHKIAEKFA 1433


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 282 KLKAVFFSSLKSDDVISVLNEY*VGNK 202
           KLKA+F + L SD  + +LN     NK
Sbjct: 464 KLKAIFITHLHSDHYLGLLNVLQAWNK 490


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 58  YQNNSSKYFVN 90
           Y+NN+SKYFVN
Sbjct: 228 YKNNTSKYFVN 238


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 140 LVTPNYSIRSDNSSLSVFIYYLLPTQYSFNTLITSSLFKLEKKTAFNFILF 292
           +V     +++D SSL    YYL   +  F  L+T +  +   +  FN + F
Sbjct: 687 IVDEGQRLKNDQSSL---FYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQF 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,921
Number of Sequences: 5004
Number of extensions: 35612
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)