Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F14
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16854| Best HMM Match : UL97 (HMM E-Value=4.9)                      29   2.8  
SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)                    29   3.8  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         28   6.6  
SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)                     28   6.6  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 27   8.7  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  27   8.7  

>SB_16854| Best HMM Match : UL97 (HMM E-Value=4.9)
          Length = 311

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 235 NYIVTFQARKKNCFQFYIILTKFVNSY---QRKSVDKQRRQWV--LICYIFSRK 381
           N I++ Q  ++   +FY ++T  VN+Y   QR  V    + W+   +C + +R+
Sbjct: 132 NTILSLQTAREKFERFYTVITNAVNTYLPLQRVQVCATNKPWIGTSLCSLIARR 185


>SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)
          Length = 721

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 235 NYIVTFQARKKNCFQFYIILTKFVNSY---QRKSVDKQRRQWV--LICYIFSRK 381
           N I++ Q  ++   +FY ++T  VN+Y   QR  V    + W+   +C + +R+
Sbjct: 384 NAILSLQTAREKFERFYTVITDAVNTYLPLQRVQVCATNKPWIGTSLCSLIARR 437


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 235 NYIVTFQARKKNCFQFYIILTKFVNSY---QRKSVDKQRRQWV--LICYIFSRK 381
           N I++ Q  ++   +FY ++T  VN+Y   QR  V    + W+   +C + +R+
Sbjct: 475 NTILSLQTAREKFERFYTVITYAVNTYLPLQRVQVCATNKPWIGTSLCSLIARR 528


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +2

Query: 317 KENRLTSREDNGYLS 361
           KEN++TSREDN +LS
Sbjct: 75  KENKITSREDNRHLS 89


>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
          Length = 423

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 194 IYYLLPTQYSFNTLITSSLFKLEKK 268
           IY++  T Y   TL+TSS+  LE K
Sbjct: 389 IYFMKETSYDNQTLVTSSMTSLEVK 413


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 235 NYIVTFQARKKNCFQFYIILTKFVNSY---QRKSVDKQRRQWV--LICYIFSRK 381
           N I++ Q  ++   +FY ++T  +N+Y   QR  V    + W+   +C + +R+
Sbjct: 132 NTILSLQTAREKFERFYTVITDALNTYLPLQRVQVCATNKPWIGTSLCSLIARR 185


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 28  RIKLFELXRCYQNNSSKYFVN 90
           RI L E+ RCY++N   YF+N
Sbjct: 263 RICLEEIDRCYRDNVMPYFLN 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,303
Number of Sequences: 59808
Number of extensions: 210405
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)