Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F14
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    28   5.7  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    27   7.5  
Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 397 YSTLLILIT-LKSVNIDI*LCIHCRSTNCWGRGSFLVLSV 513
           Y T+LI++T L ++N+ + +C     ++ W  G+F+V  V
Sbjct: 222 YQTVLIVVTKLLAINVILVMCYQDGYSDDWAFGAFVVSDV 261


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +1

Query: 196 LLLITYSVFI*YTNYIVTFQARKKNCFQFYIILTKFVNSYQRKSVDKQRRQWVLICYIFS 375
           L+L T  V       +++  A +K CF FY      + S  +  V K   +++ I Y+  
Sbjct: 118 LILFTLHVITQVFQILISLLAVRKFCFHFY---PSHIESVLK--VQKYILKFIWIFYLLK 172

Query: 376 RKTNLHVYSTLLILITLKSVN 438
             T    +S +L LIT   +N
Sbjct: 173 MITTKENHSVILDLITFIVLN 193


>Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical
           protein AC3.1 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/38 (23%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 FYLLLITYSVFI*YTNYIVTFQARKKNCFQFYIILTKF 303
           ++++ +  +V   ++ YI+ FQ+ K + ++FY+   +F
Sbjct: 28  YHVISVVSTVISFFSMYIILFQSGKMDGYRFYLFYMQF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,362,929
Number of Sequences: 27780
Number of extensions: 184958
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)