Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F13
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 132 3e-32
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 0.72
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 3.8
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 6.7
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 8.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.9
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 8.9
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 132 bits (320), Expect = 3e-32
Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 1/181 (0%)
Frame = +3
Query: 84 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 260
LP +ST +L GS+ + + T + +TD PDFS Y+ K T D +
Sbjct: 19 LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65
Query: 261 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 440
+ +Y + F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66 ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119
Query: 441 VTFKWRGKPLFIRHRTADEISTXKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVP 620
+ KW+GKP+FIRHRT +EI +V + TLRDPQ D R Q P+WLV+IGVCTHLGCVP
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179
Query: 621 V 623
+
Sbjct: 180 I 180
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.7 bits (61), Expect = 0.72
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 412 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPXRLCLSTRSVTLSTTINVPKTPSGWS 585
S+ K QKE S SN L + + T + R+ TRS +T P PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587
Query: 586 *SXYVPT 606
S +P+
Sbjct: 588 PSIAIPS 594
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.8
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 54 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 233
TP +++ P+P + SLPI L T +PA A + S D + K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372
Query: 234 TQDPTSKANETIDERQSFTY 293
P S A + +E+Q TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 506 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 372
GRD ++C + K W S + ++ + FS+L LG I +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 45 VVPTPSEKTVVLPLPKTSTVETLHGS 122
++PT +EK++ LPL ST++T+ S
Sbjct: 715 IIPT-TEKSLYLPLRNRSTIDTISHS 739
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 76 TTVFSEGVGTTTRGFRLLATTW 11
T +F G+G + +G+ +A TW
Sbjct: 19 TVIFLHGLGDSGQGWSFMANTW 40
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 469 NGFPLHLKVTDFPSG 425
NGFP+ TD+PSG
Sbjct: 48 NGFPVSEDATDYPSG 62
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 409 SSWLKFQKESLSPSNGEENHCLSVTGQQTKSRPXRLCLSTRSVTLSTTIN 558
+S +K QK + S+GEE S G T + + + +R LST+++
Sbjct: 108 TSSVKRQKTLPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLS 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,874
Number of Sequences: 5004
Number of extensions: 49024
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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