Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F13
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0023 - 19000591-19001234,19003322-19003496                      126   2e-29
04_03_0792 + 19693957-19694146,19695614-19696260                      125   3e-29
04_03_0621 - 18102243-18104249                                         29   3.0  
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217...    29   3.0  
11_06_0546 + 24853167-24853880                                         29   4.0  
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530...    28   5.2  

>02_04_0023 - 19000591-19001234,19003322-19003496
          Length = 272

 Score =  126 bits (303), Expect = 2e-29
 Identities = 56/116 (48%), Positives = 77/116 (66%)
 Frame = +3

Query: 276 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 455
           +++F Y +                  FV SMSA+ DVLALA +E+ L+ I  G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167

Query: 456 RGKPLFIRHRTADEISTXKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPV 623
           RGKP+FIR RT ++I+   +V + +LRDPQ D +R +NP+WLVVIGVCTHLGC+P+
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPL 223


>04_03_0792 + 19693957-19694146,19695614-19696260
          Length = 278

 Score =  125 bits (301), Expect = 3e-29
 Identities = 57/116 (49%), Positives = 76/116 (65%)
 Frame = +3

Query: 276 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 455
           +++F Y +                  FV SMSA+ DVLALA +E+ L+ I  G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173

Query: 456 RGKPLFIRHRTADEISTXKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPV 623
           RGKP+FIR RT D+I+   +V V +LR PQ D +R +NP+WLVVIGVCTHLGC+P+
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIPL 229


>04_03_0621 - 18102243-18104249
          Length = 668

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 18  VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSL 125
           +A SL+ + + PT   +  +   P+T+TV+T H  L
Sbjct: 23  IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLL 58


>02_02_0648 -
           12619468-12619874,12621432-12621512,12621607-12621716,
           12621896-12622164,12622440-12622567,12622637-12622699,
           12623196-12623493
          Length = 451

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 421 KFQKESLSPSNGEENHCLSVTGQQTKS 501
           K +KES++ +N +E HC++  G Q  S
Sbjct: 18  KLKKESMARANADELHCITFRGDQPGS 44


>11_06_0546 + 24853167-24853880
          Length = 237

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 492 DEISTXKAVPVDTLRDPQHDDQ 557
           DEI   +  P+ TL+ PQH DQ
Sbjct: 169 DEIKAHRKQPILTLKQPQHQDQ 190


>06_01_0724 +
           5299278-5299542,5299690-5299950,5300246-5300351,
           5300633-5300697,5300759-5301233,5302239-5302347,
           5302432-5302710,5303025-5303231,5303319-5303468,
           5304164-5304277
          Length = 676

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 43  WSYQHPPRKRSSCPC--QKLQLWKLCMDPCRFRV*RSKQELEYLPKYVSLILTFHTRISR 216
           WS  H P  R +C C   ++       +PC     R +  ++Y    ++ I       +R
Sbjct: 240 WSVSHDPHPRWTCKCNPSRVSFSVSNKNPCTLHQARLQNLIQYFQCPMTQIGQRKKNRNR 299

Query: 217 LTVAKRLRTRLRRPMKLLMKGN 282
            T  K +    RR ++ L++ N
Sbjct: 300 QTCTKGMDAAGRRIVRALIRAN 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,055
Number of Sequences: 37544
Number of extensions: 345974
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)