Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F13
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   7e-34
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                29   2.3  
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  29   3.1  
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   7.1  
SB_38741| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  101 bits (242), Expect(2) = 7e-34
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = +3

Query: 423 IPEGKSVTFKWRGKPLFIRHRTADEISTXKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCT 602
           I  GK++ FKWRGKPLF+RHRTADEIS  + V V +LR P+ D  R ++ KWLV+IGVCT
Sbjct: 110 ITSGKNMVFKWRGKPLFVRHRTADEISEEQNVDVASLRHPEADADRVKDDKWLVLIGVCT 169

Query: 603 HLGCVPV 623
           HLGCVP+
Sbjct: 170 HLGCVPI 176



 Score = 60.5 bits (140), Expect(2) = 7e-34
 Identities = 33/78 (42%), Positives = 43/78 (55%)
 Frame = +3

Query: 204 PDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAAD 383
           PDF  YRR  T +   K   T   R++FTYL+                 +F+S+MSA+AD
Sbjct: 2   PDFGDYRRPSTSE-VGKTETTEIGRRAFTYLVVAGMGVTGVHAGKNLLVNFLSTMSASAD 60

Query: 384 VLALAKIEIKLAEIPEGK 437
           VLA+AKIE+ L  IPE K
Sbjct: 61  VLAMAKIEVDLNTIPEEK 78


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 406 KSSWLKFQKESLSPSNGEENHCLSVTGQQTKSRPXRLCLSTRSVTLSTTINVPK 567
           K + ++ +  +     G +N+ L +TGQ+T +   R       +TL T  +VPK
Sbjct: 245 KETEIRHRFRNSESDGGAKNNLLQITGQKTDNSVKRPIRGNIRITLVTKSSVPK 298


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 426 EFQPA*FQSWLKPKHQQPLTLMTQSG 349
           +F P+ F ++L P+ Q P  LM+ SG
Sbjct: 422 DFDPSEFDAYLNPEQQDPALLMSPSG 447


>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 616 THPKWVHTPITTNHL 572
           THPK  +TP+T NH+
Sbjct: 16  THPKLTYTPVTPNHI 30


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 30  LKPLVVVPTPSEKTVVLPLPKTSTVETLH--GSLPIQGLKVKAGTRVPAQVRFAHTDISY 203
           LK   + P+P+      P P  S V+  H   S P   +K  A   VPA        +S+
Sbjct: 331 LKGSSIPPSPNRSPAASPAPSPSAVKPFHPVSSAP-SAIKFPAKPNVPAPGTIMPAPVSH 389

Query: 204 P 206
           P
Sbjct: 390 P 390


>SB_38741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 415 WLKFQKESLSPSNGEENHCLSVTGQQTKSRPXRLCLS-TRSVTLSTTINVP--KTPSGW 582
           W        SPSN +   C S+  Q T  +    CL  T S  +++ +++P   TP+ W
Sbjct: 109 WFPLPSPPQSPSNTKALFCPSMPVQLTPEKSGHDCLKRTESPAVASKLSLPGSVTPAMW 167


>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 45  VVPTPSEKTVVLPLP 89
           ++P PSEK V+LPLP
Sbjct: 84  ILPLPSEKHVILPLP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,687,136
Number of Sequences: 59808
Number of extensions: 389430
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)