Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F13
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   160   6e-40
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   2.7  
AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  160 bits (389), Expect = 6e-40
 Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 1/170 (0%)
 Frame = +3

Query: 117 GSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TY 293
           G +   GL VK G  V ++ R AHTD+++PD S YRR  T++    A +T D+R++  T 
Sbjct: 59  GGVFTNGLAVK-GINVTSR-RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTA 116

Query: 294 LIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLF 473
           L                    VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F
Sbjct: 117 LYYGAGGVLSLWAGKEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVF 176

Query: 474 IRHRTADEISTXKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPV 623
           ++HRT  EI+  KAVPV  LR PQHDD+R Q  +W VVIGVCTHLGCVP+
Sbjct: 177 VKHRTKAEIAKEKAVPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPI 226


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 66  KTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAY 221
           +TV    P  S + T+H     QG+ +  G       RFAHT++ Y DFS +
Sbjct: 207 ETVFTWSPHGSYLSTIHK----QGIILWGGKDYARAHRFAHTNVQYIDFSPW 254


>AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical
           protein F40A3.5 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 120 IHAKFPQLKFLARAGRPFSRRVLVRPPEVSGC*LRLG 10
           IH++  +       GR F+R VLV  P++  C ++LG
Sbjct: 224 IHSQLDEFGQELTHGRIFTRNVLVTEPDLRKCEVKLG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,780
Number of Sequences: 27780
Number of extensions: 284526
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)