Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F11
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.31 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   5.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.6  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    25   6.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 113 PSGPRAPHSSGVPCNSALSFVASAQRVHGPEN--DACKPQDAKQSEQLVPV 259
           P+G  +  SS +P  S LS  +  QR   P N  +  KP D+KQ E+L+PV
Sbjct: 135 PNGSES--SSPIPL-SLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPV 182


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 191 VHGPENDACKPQDAKQSEQLVPVAPAGLKALCDACSQLYP 310
           +  P +D+ + +D      +  +   G K +CD CS L P
Sbjct: 119 IQDPIDDSLEKEDGLIRRSMTSLCRHGPKGMCDYCSPLEP 158


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 580 APSAASRNVSSMPQPDGRGAPADSAARSGG 491
           AP+A   +++ +PQ DGR     S   SGG
Sbjct: 483 APAAPVASIAELPQQDGRANLMASIRASGG 512


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 198 DRKMTLANLKMPXXXXXXYQ*LRLA*KHYVMLVPSCTQTSLTLCRSRPGS 347
           D K    +LK        Y+   L   H +ML P+C + + T   + PG+
Sbjct: 33  DVKTNYVSLKPSSYYAELYKLNHLEGAHVIMLGPNCEEAAKTALHTWPGA 82


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 238 LFGILRFASVIFRSMNSLRRRN 173
           LFGIL  + VIF+ +N  R R+
Sbjct: 550 LFGILALSGVIFKLINFFRTRS 571


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 23/96 (23%), Positives = 41/96 (42%)
 Frame = +2

Query: 59  SMNYAETK*IVNNIAMSCPSGPRAPHSSGVPCNSALSFVASAQRVHGPENDACKPQDAKQ 238
           S+NY+ T  + +N+ +    G      S V  N  +  +  A +    +  A K + AK 
Sbjct: 24  SLNYSLTT-VSDNVMIDTTRGEIEFSDSAV--NGTMD-IEGAPKFAPAKTSAEKKRGAKP 79

Query: 239 SEQLVPVAPAGLKALCDACSQLYPDQPNPLQVTTRL 346
             + VP+ P  +  L +   +LYP     L +  R+
Sbjct: 80  QMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRM 115


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 358 QPIFEPGRDLQRVRLVWVQLG 296
           QP+F   RD+ R R ++++LG
Sbjct: 23  QPVFTRTRDVDRCRKIYLKLG 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,395
Number of Sequences: 5004
Number of extensions: 49327
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)