Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F11
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22063| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_15097| Best HMM Match : p450 (HMM E-Value=0) 33 0.24
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 2.3
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 29 2.3
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 28 6.9
SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07) 28 6.9
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_17496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_22063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 70.9 bits (166), Expect = 7e-13
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +2
Query: 263 PAGLKALCDACSQLYPDQPNPLQVTTRLKYWLGGQDPLDYISMYRNPG 406
P GL+A+ +LYPDQPNPLQVT +K WLGG DPLD+ISM+ N G
Sbjct: 21 PPGLEAIYSTLRKLYPDQPNPLQVTALVKCWLGGPDPLDFISMFGNAG 68
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/57 (59%), Positives = 35/57 (61%)
Frame = +3
Query: 396 GTQGKPEENIPPHWHYISFGLSDLHGDGRVHPPPDRAALSAGAPLPSGCGIELTFRL 566
G G P E IPPHWHY+S GLSDLHGDGRVH G SG G ELTFRL
Sbjct: 65 GNAGSPMEGIPPHWHYVSSGLSDLHGDGRVHD-------FTGRDSRSGYGFELTFRL 114
>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
Length = 1310
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 399 TQGKPEENIPPHWHYISFGLSDLHGDGRV 485
T GK + ++PP I+F + DL+GDG V
Sbjct: 182 TPGKKQPDVPPRMFEIAFQMFDLNGDGEV 210
>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 244 FRLFGILRFASVIFRSMNSLRRRNE*QGTVARHPRRMRSPWAT 116
F I+RFA+V+ RS + +RRN G PR +R W+T
Sbjct: 896 FERLCIVRFAAVLIRSPVAEKRRN---GFPVAIPRSLRFTWST 935
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 116 SGPRAPHSSGVPCNSALSFVASAQRVHGPENDACKPQDAKQSEQLVPVAPAGLKALCD-- 289
+ PR +A++ V A H PENDAC+P S+ VP + + D
Sbjct: 924 TSPRKALHRKAHARTAIAPVEKAA-THSPENDACQPDKITCSKDNVPCSKDDITCNKDSI 982
Query: 290 ACSQ 301
ACS+
Sbjct: 983 ACSR 986
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 149 PCNSALSFVASAQRVHGPENDACKPQDAKQSEQLVPVAPAGLKALCDACSQLYPDQP 319
P N L+ +++ V G E P+ A+QS + +G++ LCD + P+QP
Sbjct: 511 PQNCFLTDSTNSRGVSGSE-----PEKAEQSREQPQYGTSGIQLLCDLLNGTLPEQP 562
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 389 MYRNPGXTGGKYTTTLALHQFRSVRPSRGWEGPPSAGSRGAVRGRAPA 532
M+R G +YT + H+ P+RG GPP GS + RGR A
Sbjct: 1881 MHRGRGHPPPQYTGGVPAHRAPPA-PTRG--GPPYRGSGASYRGRGRA 1925
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -2
Query: 609 EPPATAGGAXPRQPRAGTSARCRSQTAGARPRTAPRDP-AEGGPSHPREGLTDRN*C 442
+P A + P P A + S G TAP DP P+ P+ D + C
Sbjct: 522 DPTAPSDPTGPSDPTAPSDPTVSSDPTGPSDPTAPSDPTVSSDPTGPKTKFYDDDDC 578
>SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)
Length = 302
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 173 VASAQRVHGPENDACKPQDAKQSEQLVPVAPAGLKALC 286
+AS + P D CKP K V V G + LC
Sbjct: 220 LASCLLHNKPSADPCKPNPCKHDGYCVQVGQTGFRCLC 257
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 362 GQDPLDYISMYRNPGXTGGKYTTTLALHQFRSVRPSRGWEGPPSAGSRG 508
G + Y + + G G Y+ R V+P + W+G P A RG
Sbjct: 429 GNNERCYDNTHMTYGNLGNDYSVLAGEEICRYVKPDKVWDGYPHALGRG 477
>SB_17496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 218 CKRHFPVHELAAQTQRMTGHC 156
C+ HFPV+ + Q QR + +C
Sbjct: 260 CRSHFPVNNRSLQCQRFSDNC 280
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,492
Number of Sequences: 59808
Number of extensions: 456556
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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