Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F11
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   2.6  
Z83117-1|CAB05569.1|  220|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46795-6|CAE48511.2|  838|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46792-8|CAE48495.2|  838|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    27   8.1  

>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 308  PDQPNPLQVTTRLKYWLGGQDPLDYISMYRNPGXTGGKYTTTLALHQF-RSVRPSRGWEG 484
            P++ + ++V  +LK    G +  +      N    G           F R+ RP    EG
Sbjct: 2415 PEEEHEVRVVKKLKVMKFGNEEKENFDNEENVEDDGKIIVRNRKRQYFERNDRPDDEEEG 2474

Query: 485  PPSAGSRGAVRGRAPAVW 538
                  R AVRGRAP ++
Sbjct: 2475 EELVNRRVAVRGRAPKIF 2492


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 607 AAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAARSGG 491
           A G+ GG  A   A+   ++ PQP    APA +AA +GG
Sbjct: 322 AGGYDGGAGAAPEAAPAAAAAPQP--APAPAAAAAPAGG 358


>Z83117-1|CAB05569.1|  220|Caenorhabditis elegans Hypothetical
           protein M04C7.3 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 588 GAXPRQPRAGTSARCRSQTAGARPRTAPRDPAEGGPSHPREGLTDRN 448
           G+ P    A T  R R  TA  R RTAP   + GG    R  + DRN
Sbjct: 171 GSAPITDHAATRNRGR-YTASGRRRTAPSPGSFGGFCRTRGEVLDRN 216


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
 Frame = -2

Query: 612 REPPAT-AGGAXPRQPRAGTSARCRSQTAGARPRT--------APRDPAEGGPSHP 472
           R PPAT A  A  R P A T     SQ     P T        AP++PA   PS+P
Sbjct: 313 RAPPATRAPPATTRAPPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSYP 368


>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical
           protein C52A11.4f protein.
          Length = 2371

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46795-6|CAE48511.2|  838|Caenorhabditis elegans Hypothetical
           protein C52A11.4b protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical
           protein C52A11.4a protein.
          Length = 2393

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 235 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 270


>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical
           protein C52A11.4f protein.
          Length = 2371

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46792-8|CAE48495.2|  838|Caenorhabditis elegans Hypothetical
           protein C52A11.4b protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical
           protein C52A11.4a protein.
          Length = 2393

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 137 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 172


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 616 CKRAAGHSGGCXAPSAASRNVSSMPQPDGRGAPADSAAR 500
           C  A   SGG   PSA S  VSS    D +GA A + AR
Sbjct: 235 CVVAIDASGGSSVPSAPSSTVSS---DDTKGAAATTTAR 270


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 607 AAGHSG----GCXAPSAASRNVSSMPQPDGRGAPADSAARSGGGWTLP 476
           A G+SG    G  A S      SS P P    APA S   SGG    P
Sbjct: 429 AGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGGSEAAP 476


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 607 AAGHSG----GCXAPSAASRNVSSMPQPDGRGAPADSAARSGGGWTLP 476
           A G+SG    G  A S      SS P P    APA S   SGG    P
Sbjct: 429 AGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGGSEAAP 476


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 580 APSAASRNVSSMPQPDGRGAPAD 512
           AP+AA+   SS P   G G+PAD
Sbjct: 87  APAAATPTASSAPTMGGMGSPAD 109


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 580 APSAASRNVSSMPQPDGRGAPAD 512
           AP+AA+   SS P   G G+PAD
Sbjct: 87  APAAATPTASSAPTMGGMGSPAD 109


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 368 DPLDYISMYRNPGXTGGKYTTTLALHQFRSVRPSRGWEGPPSAGSRGAVR--GRAPA 532
           DP D  S Y  PG +      T++     S   S    G  S+GS G  R  G+ P+
Sbjct: 127 DPFDKFSAYSGPGSSQQAVPRTISKISEESGSGSGSGSGNDSSGSSGPTRMSGQVPS 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,140
Number of Sequences: 27780
Number of extensions: 331739
Number of successful extensions: 1090
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)