Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F07
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   151   9e-38
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.9  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.9  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  151 bits (366), Expect = 9e-38
 Identities = 83/190 (43%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
 Frame = +3

Query: 126 LSQSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTWSQGTSPLX 302
           L +S++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A        T P  
Sbjct: 20  LDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA--------TLPGT 71

Query: 303 XXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSS 482
                              +DLFGS                 + Y  KK+ KP  + KS 
Sbjct: 72  AKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSL 130

Query: 483 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD 662
           + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS++
Sbjct: 131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLE 190

Query: 663 LLTEKIQXFE 692
            L E+++ FE
Sbjct: 191 ALQEELEGFE 200


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 587 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 480
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 198 PCQLAQILEHQLEKECIQTRSFDSAK 121
           P Q+A+I+  +  + C+ T  +DS +
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVR 146


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 301 PPVLNPRLPPQQRKTTMTT 357
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,689
Number of Sequences: 5004
Number of extensions: 48923
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)