Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F07
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   136   2e-32
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   128   4e-30
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   126   2e-29
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    29   4.6  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  136 bits (329), Expect = 2e-32
 Identities = 83/188 (44%), Positives = 103/188 (54%), Gaps = 5/188 (2%)
 Frame = +3

Query: 126 LSQSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTSAERKTWSQGT 290
           L++SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S  +AE +     +
Sbjct: 41  LTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVES 100

Query: 291 SPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALI 470
           +                      VDLFG                  +A A K S K    
Sbjct: 101 TACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKKKES 154

Query: 471 AKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDK 650
            KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I DD 
Sbjct: 155 GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 214

Query: 651 VSVDLLTE 674
           VSVD L E
Sbjct: 215 VSVDSLIE 222


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  128 bits (309), Expect = 4e-30
 Identities = 76/186 (40%), Positives = 98/186 (52%), Gaps = 4/186 (2%)
 Frame = +3

Query: 132 QSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTS----PL 299
           ++YVSG   S+ D++VF  V   P A  P+  RWY+ +A+  ++     + G +      
Sbjct: 24  KTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGA 83

Query: 300 XXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKS 479
                               +DLFG                  +  A K S K     KS
Sbjct: 84  ASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKASSKKKESGKS 136

Query: 480 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 659
           S+LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI KLQIM  I DD VSV
Sbjct: 137 SVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSV 196

Query: 660 DLLTEK 677
           D L E+
Sbjct: 197 DSLIEE 202


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  126 bits (304), Expect = 2e-29
 Identities = 80/191 (41%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
 Frame = +3

Query: 126 LSQSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTSAER---KTWS 281
           L++SY+SGY  S  D+ V+     AP+++  +V RW+  I      S  +A+    K  S
Sbjct: 22  LTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVES 81

Query: 282 QGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKP 461
                                     VDLFG                  +A A K S K 
Sbjct: 82  TAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKK 135

Query: 462 ALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIE 641
               KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I 
Sbjct: 136 KESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIV 195

Query: 642 DDKVSVDLLTE 674
           DD VSVD L E
Sbjct: 196 DDLVSVDSLIE 206


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
 Frame = +3

Query: 117 NX*LSQSYV---SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 245
           N  LSQ  V   +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 80  NQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,474
Number of Sequences: 37544
Number of extensions: 349527
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)