Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F07
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             182   2e-46
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               56   2e-08
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 47   1e-05
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           28   6.2  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  182 bits (443), Expect = 2e-46
 Identities = 93/190 (48%), Positives = 113/190 (59%), Gaps = 3/190 (1%)
 Frame = +3

Query: 132 QSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTSPLX--- 302
           +SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY   ++    +  S      
Sbjct: 22  RSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGEGKQNFPGEKKSVESFGP 81

Query: 303 XXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSS 482
                              +DLFGS                LKAY +KK+KK  +IAKS+
Sbjct: 82  AGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSN 141

Query: 483 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD 662
           I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKLVP+ YGI KLQI  V+EDDK+S D
Sbjct: 142 IMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTD 201

Query: 663 LLTEKIQXFE 692
            L E+I  FE
Sbjct: 202 FLEEEICKFE 211


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
 Frame = +3

Query: 426 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 593
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 594 PVGYGINKLQIMCVIEDDKVSVDLLTEKIQXFE 692
            + YG+ KLQI CVIED KVS D L +K+  FE
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFE 152


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 150 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 254
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +3

Query: 585 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQXFE 692
           KLV + YG+ KLQI CVIED KVS D L +K+  FE
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFE 37


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 557 FNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFLVT 378
           F +  L+F F+ +  ++ W    ++     E WF ++L S+     F  +F F    LVT
Sbjct: 324 FTTHNLLFFFILLCMVLDWFQPAKSDTAKTELWFSQILASVL--VAFKFAFPFFSASLVT 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,815
Number of Sequences: 59808
Number of extensions: 378520
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)