Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F06
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          99   1e-21
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.2  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score =   99 bits (238), Expect = 1e-21
 Identities = 52/110 (47%), Positives = 67/110 (60%)
 Frame = +2

Query: 107 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 286
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R                        GRK 
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKN 38

Query: 287 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 436
            G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 39  RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
 Frame = +2

Query: 47  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 223
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 224 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 388
           IY+ S +  + V K+  GRK    T +    S  +   +   S E L L  +V +
Sbjct: 280 IYLHSRLDTQPVNKVI-GRK---YTKTFVIMSGPNRPMRVPHSSEPLTLTNRVAE 330


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 185 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 364
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 365 KL 370
           +L
Sbjct: 117 QL 118


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 235 LTCWSQDC---HQDLRWAQT*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 396
           ++C ++DC   +  L   +T  S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 262 VSCKARDCGPLNTPLNGTKT-GSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 304 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 396
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 304 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 396
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 58  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 177
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 CVVLPSFVIFTFAHLLESRLSPRSSVG 278
           C  LP  V+F   H++   L P SSVG
Sbjct: 26  CGTLPDLVMFRTGHIMRRALIPCSSVG 52


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 304  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 411
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,007
Number of Sequences: 59808
Number of extensions: 323462
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)