Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F03
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   0.69 
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   2.8  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.8  
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe...    26   4.8  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.4  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   8.5  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   8.5  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   8.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.5  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   8.5  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 23/120 (19%), Positives = 45/120 (37%)
 Frame = +3

Query: 351 NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFL 530
           N+ GV+   +  T +F+ S +          G        ++A   L      +   +  
Sbjct: 431 NLIGVFFHAYPATGSFSRSAINAKSGVRTPLGGIFTAGVVVLALYCLTGAFYYIPNAVLS 490

Query: 531 SVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLF 710
           +V    V  L+  +  T + W MQ +   I + A  + + ++ +NG    +      LLF
Sbjct: 491 AVIIHSVFDLIIPWRQTLLFWRMQPLEALIFICAVFVSVFSSIENGIYTAVCLSAALLLF 550


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 528 LSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFIT 695
           L VY  I++      +  + ++++   T P  ++    +I  NYK+GS   L FIT
Sbjct: 736 LDVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLA--EISKNYKSGSLNILDFIT 789


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -1

Query: 398 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 231
           +V S +  L + + NI   GTLT  +  ++W+ +     N  +        +  WY
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59


>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 456 AIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVL--VSGYTSTDILWTMQAVTVPIILI 629
           A+Q+  IAAL+   G   +KG  F+ +Y    S L  V  Y  T+   T   +   I  +
Sbjct: 71  AVQSYSIAALLQLTGTVTLKGAFFVGLYVFGASGLPDVVDYMFTESRGTPYILVKTISSL 130

Query: 630 AKSI 641
            KS+
Sbjct: 131 VKSV 134


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
 Frame = +3

Query: 327 QSKSAEGI-NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHY-- 497
           Q   A G+ N+ G++   +  T +F+ S +      A  +     I TA +  L L+   
Sbjct: 408 QELIAMGVTNLIGIFFNAYPATGSFSRSAIKA---KAGVKTPIAGIFTAAVVILSLYCLT 464

Query: 498 -GGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNG 668
                +   I  +V    V+ L+     T + W +Q +   I  I+  + + ++ +NG
Sbjct: 465 DAFYYIPNAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVFSSIENG 522


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -2

Query: 355 ILIPSALLLCKILKICGTFTSMDPRMMPIPRPLLSVDLKHGTSRKLYFRKYSL*HF*DNT 176
           IL  +  LLC+ L +    +  +    PIPRP L   LK+       F  +S+  F  + 
Sbjct: 27  ILDLNGTLLCRALAVRSEKSVYEASRNPIPRPGLHNFLKY------IFANFSVMVFSSSK 80

Query: 175 PNNSPFKISAM 143
           P+N    +SA+
Sbjct: 81  PHNVQAMLSAI 91


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 YGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAM 473
           YGV L   +  A  AY Y MG+P +   E     ++ A+
Sbjct: 309 YGVSLNHSSSKAAIAYMYFMGYPVAENTESITKLLENAL 347


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSY-VMGFPFSAWGEGTF 452
           PQI K  ++KS EG++I  ++  L A   N +Y++ ++ FP S +   T+
Sbjct: 195 PQIIKNHKAKSTEGLSI--IFFVL-ASVGNTSYAFSILVFPASDYLNYTY 241


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = -3

Query: 606  QPAW-SIIYQWRYNH 565
            QP W +I++ WRY H
Sbjct: 1016 QPCWYNILFSWRYKH 1030


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 614 SYHSHSQVNPNRNELQKWQHWSTVV 688
           SY +HS  N  RN     QH+ST +
Sbjct: 97  SYTNHSPANLTRNSSFNHQHYSTTL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,728
Number of Sequences: 5004
Number of extensions: 66678
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)