Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F03
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   5e-20
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       29   3.9  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             28   6.8  
SB_8013| Best HMM Match : Ornatin (HMM E-Value=5)                      28   6.8  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 28   9.0  

>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 45/100 (45%), Positives = 63/100 (63%)
 Frame = +3

Query: 435  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTV 614
            WGE  FL IQT+++  L  H+   PM   +F  +Y   V VL+S   S DI   + ++ V
Sbjct: 928  WGESFFLCIQTSLLIILYFHFNRKPMIAALFCGLYAVSVYVLLSDKVSLDIHTKLVSLNV 987

Query: 615  PIILIAKSIQIGTNYKNGSTGQLSFITCFLLFGGSVXRIF 734
            P++ I+K +QI  N++NG TGQLSFI  FLLF G++ RIF
Sbjct: 988  PLMAISKLLQIVANFRNGHTGQLSFIMVFLLFVGAIARIF 1027


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +3

Query: 345  GINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLH 494
            G+  Y +YL++  + A +   +++     AWG    +   TA +AA++++
Sbjct: 1533 GVEGYNLYLQIVQVMATYRRRFMLKAVVFAWGVPAVIVAITATVAAVLVN 1582


>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = +2

Query: 458 HPNGNDS--SFSTPLW--WRSNEGRNISVCLLCNSLSFSKW-LYLH*YIMDHAGCHCSYH 622
           HP G  S  S S+PL+     +   + +  LL  S S   W +  H  I+     H SYH
Sbjct: 464 HPTGQSSPSSSSSPLFVNHHPHHHHHPTGQLLLTSSSSPHWSIITHIIIITTLVNHHSYH 523

Query: 623 SHSQVNPNRNELQKWQHWSTVVYNLL 700
            H     +        HWS + + ++
Sbjct: 524 HHHPTGQSSPTSSSSPHWSVITHIII 549


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 530 VCLLCNSLSFSKWLYLH*YIMDHAGCHCSYHSHSQVNPNRNELQKWQH-WSTVVYNLLSV 706
           VCL+  SL  S W + H  +    G    YH+H  V+ +  +   W H   +V  +L   
Sbjct: 393 VCLVSVSLGQSIWYHTHPSVSVSLGQSIWYHTHPSVSVSLGQ-SIWYHTHPSVSVSLGQS 451

Query: 707 VW 712
           +W
Sbjct: 452 IW 453


>SB_8013| Best HMM Match : Ornatin (HMM E-Value=5)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 561 VSGYTSTDILWTMQAVTVPIILIAK--SIQIGTNYKNGSTGQLSFITCFLLF 710
           V G + + + W  +  T+P+ + A+  SI  G   KN     +  +  F+ F
Sbjct: 63  VIGISGSSVTWNAEPTTLPVEIDAQKASISTGAGVKNSDAKSVRLVMAFIHF 114


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 531 SVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNY 659
           +VY  +V   V G  ST  +W+M A  + + ++     +GT++
Sbjct: 153 AVYLMVVIWAVFGAMSTLQIWSMTAYRISVCIVVPLFLLGTSF 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,781,721
Number of Sequences: 59808
Number of extensions: 479166
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)