Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F03
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001898-1|AAH01898.1|  247|Homo sapiens mannose-P-dolichol util...   173   5e-43
AF059752-1|AAG43121.1|  211|Homo sapiens My008 protein protein.       135   1e-31
DQ499597-1|ABF54968.1|  299|Homo sapiens HBeAg-binding protein 2...   117   4e-26
AK055923-1|BAB71046.1|  121|Homo sapiens protein ( Homo sapiens ...    92   2e-18
AK027742-1|BAB55334.1|  126|Homo sapiens protein ( Homo sapiens ...    48   5e-05
BC027625-1|AAH27625.1|  202|Homo sapiens PQ loop repeat containi...    39   0.016
AK001091-1|BAE46613.1|  202|Homo sapiens protein ( Homo sapiens ...    39   0.016
AC018463-1|AAX93048.1|  202|Homo sapiens unknown protein.              39   0.016
X55313-1|CAA39021.1|  455|Homo sapiens tumor necrosis factor rec...    30   7.5  
M75866-1|AAA61201.1|  455|Homo sapiens tumor necrosis factor rec...    30   7.5  
M63121-1|AAA36754.1|  455|Homo sapiens tumor necrosis factor rec...    30   7.5  
M60275-1|AAA36756.1|  453|Homo sapiens TNF receptor protein.           30   7.5  
M58286-1|AAA36753.1|  455|Homo sapiens tumor necrosis factor rec...    30   7.5  
M33294-1|AAA03210.1|  455|Homo sapiens protein ( Human tumor nec...    30   7.5  
BC010140-1|AAH10140.1|  455|Homo sapiens tumor necrosis factor r...    30   7.5  
AY131997-1|AAM77802.1|  455|Homo sapiens tumor necrosis factor r...    30   7.5  

>BC001898-1|AAH01898.1|  247|Homo sapiens mannose-P-dolichol
           utilization defect 1 protein.
          Length = 247

 Score =  173 bits (421), Expect = 5e-43
 Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
 Frame = +3

Query: 156 LKGLLLGVL-SQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQS 332
           LK LL+ +L  +KCY++ F++++ L VPC K                    PQ+FKIL +
Sbjct: 9   LKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGA 68

Query: 333 KSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPM 512
           KSAEG+++  V LEL A+T    YS    FPFS+WGE  FL +QT  I  LV+HY G  +
Sbjct: 69  KSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQTV 128

Query: 513 KGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFI 692
           KG  FL+ Y  ++ VL+S  T   ++  +QA  VP +++ + +Q  TNY NG TGQLS I
Sbjct: 129 KGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNGHTGQLSAI 188

Query: 693 TCFLLFGGSVXRIF 734
           T FLLFGGS+ RIF
Sbjct: 189 TVFLLFGGSLARIF 202


>AF059752-1|AAG43121.1|  211|Homo sapiens My008 protein protein.
          Length = 211

 Score =  135 bits (327), Expect = 1e-31
 Identities = 71/186 (38%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
 Frame = +3

Query: 156 LKGLLLGVL-SQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQS 332
           LK LL+ +L  +KCY++ F++++ L VPC K                    PQ+FKIL +
Sbjct: 9   LKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGA 68

Query: 333 KSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPM 512
           KSAEG+++  V LEL A+T    YS    FPFS+WGE  FL +QT  I  LV+HY G  +
Sbjct: 69  KSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQTV 128

Query: 513 KGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNG--STGQLS 686
           KG  FL+ Y  ++ VL+S  T   ++  +QA  VP +++ + +Q  TN   G  ++ Q S
Sbjct: 129 KGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNTTTGTQASSQPS 188

Query: 687 FITCFL 704
             +C L
Sbjct: 189 QSSCCL 194


>DQ499597-1|ABF54968.1|  299|Homo sapiens HBeAg-binding protein 2
           binding protein A protein.
          Length = 299

 Score =  117 bits (282), Expect = 4e-26
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
 Frame = +3

Query: 156 LKGLLLGVL-SQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQS 332
           LK LL+ +L  +KCY++ F++++ L VPC K                    PQ+FKIL +
Sbjct: 9   LKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGA 68

Query: 333 KSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPM 512
           KSAEG+++  V LEL A+T    YS    FPFS+WGE  FL +QT  I  LV+HY G  +
Sbjct: 69  KSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQTV 128

Query: 513 KGGIFLSVYCAIVSVLVSGYTSTDIL 590
           KG  FL+ Y  ++ VL+S  T   ++
Sbjct: 129 KGVAFLACYGLVLLVLLSPLTPLTVV 154


>AK055923-1|BAB71046.1|  121|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31361 fis, clone MESAN2008460, highly similar to
           Homo sapiens SL15 protein mRNA. ).
          Length = 121

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
 Frame = +3

Query: 156 LKGLLLGVL-SQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQS 332
           LK LL+ +L  +KCY++ F++++ L VPC K                    PQ+FKIL +
Sbjct: 9   LKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGA 68

Query: 333 KSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMI 476
           KSAEG+++  V LEL A+T    YS    FPFS+WGE  FL +QT  I
Sbjct: 69  KSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITI 116


>AK027742-1|BAB55334.1|  126|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14836 fis, clone OVARC1001702. ).
          Length = 126

 Score = 47.6 bits (108), Expect = 5e-05
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 156 LKGLLLGVL-SQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQS 332
           LK LL+ +L  +KCY++ F++++ L VPC K                    PQ+FKIL +
Sbjct: 9   LKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGA 68

Query: 333 KSAEGI 350
           KSA G+
Sbjct: 69  KSAAGL 74


>BC027625-1|AAH27625.1|  202|Homo sapiens PQ loop repeat containing
           3 protein.
          Length = 202

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 30/130 (23%), Positives = 56/130 (43%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 485
           PQI  +L ++SA G+++  + LEL        Y    G+P   + E   L  Q  ++   
Sbjct: 23  PQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYPILIAQDVILLLC 82

Query: 486 VLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKN 665
           + H+ G   +   +++V  +   +L       D+   M   T  I   +K  Q+   +K 
Sbjct: 83  IFHFNGNVKQATPYIAVLVSSWFILALQKWIIDL--AMNLCTF-ISAASKFAQLQCLWKT 139

Query: 666 GSTGQLSFIT 695
             +G +S +T
Sbjct: 140 RDSGTVSALT 149


>AK001091-1|BAE46613.1|  202|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10229 fis, clone HEMBB1000136. ).
          Length = 202

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 30/130 (23%), Positives = 56/130 (43%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 485
           PQI  +L ++SA G+++  + LEL        Y    G+P   + E   L  Q  ++   
Sbjct: 23  PQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYPILIAQDVILLLC 82

Query: 486 VLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKN 665
           + H+ G   +   +++V  +   +L       D+   M   T  I   +K  Q+   +K 
Sbjct: 83  IFHFNGNVKQATPYIAVLVSSWFILALQKWIIDL--AMNLCTF-ISAASKFAQLQCLWKT 139

Query: 666 GSTGQLSFIT 695
             +G +S +T
Sbjct: 140 RDSGTVSALT 149


>AC018463-1|AAX93048.1|  202|Homo sapiens unknown protein.
          Length = 202

 Score = 39.1 bits (87), Expect = 0.016
 Identities = 30/130 (23%), Positives = 56/130 (43%)
 Frame = +3

Query: 306 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 485
           PQI  +L ++SA G+++  + LEL        Y    G+P   + E   L  Q  ++   
Sbjct: 23  PQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYPILIAQDVILLLC 82

Query: 486 VLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKN 665
           + H+ G   +   +++V  +   +L       D+   M   T  I   +K  Q+   +K 
Sbjct: 83  IFHFNGNVKQATPYIAVLVSSWFILALQKWIIDL--AMNLCTF-ISAASKFAQLQCLWKT 139

Query: 666 GSTGQLSFIT 695
             +G +S +T
Sbjct: 140 RDSGTVSALT 149


>X55313-1|CAA39021.1|  455|Homo sapiens tumor necrosis factor
           receptor type 1 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>M75866-1|AAA61201.1|  455|Homo sapiens tumor necrosis factor
           receptor 1 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>M63121-1|AAA36754.1|  455|Homo sapiens tumor necrosis factor
           receptor protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>M60275-1|AAA36756.1|  453|Homo sapiens TNF receptor protein.
          Length = 453

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>M58286-1|AAA36753.1|  455|Homo sapiens tumor necrosis factor
           receptor protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>M33294-1|AAA03210.1|  455|Homo sapiens protein ( Human tumor
           necrosis factor receptor mRNA, complete cds. ).
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>BC010140-1|AAH10140.1|  455|Homo sapiens tumor necrosis factor
           receptor superfamily, member 1A protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


>AY131997-1|AAM77802.1|  455|Homo sapiens tumor necrosis factor
           receptor superfamily, member 1A protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 338 CRRNQY--LWSLSGVVCYHCELCL 403
           CR+NQY   WS +   C++C LCL
Sbjct: 127 CRKNQYRHYWSENLFQCFNCSLCL 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,280,578
Number of Sequences: 237096
Number of extensions: 2446049
Number of successful extensions: 11545
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11540
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)