Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_F01
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 69 5e-13
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 56 3e-09
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 50 2e-07
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 46 3e-06
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 45 8e-06
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.9
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 4.9
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 4.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.5
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 6.5
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 6.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.6
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 68.9 bits (161), Expect = 5e-13
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 318 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 491
+ ++S F D+E+ATSE SEE L +EI D+ + S K +R + R+ H +P+
Sbjct: 5 WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64
Query: 492 VQVHAATLLDACVANCGRFFHLEVASRDF 578
VQ+ A L D CV N G F LE+ASR+F
Sbjct: 65 VQIMALKLTDTCVKNGGSGFLLEIASREF 93
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = +3
Query: 321 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 497
G + + + +AT E NT E+W +IM+ CD+ ++S + ++ + +RL + ++Q
Sbjct: 4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63
Query: 498 VHAATLLDACVANCGRFFHLEVASRDFETEXRRLLS 605
+ A TL DA V NC E++SR F ++ S
Sbjct: 64 LLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIAS 99
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 324 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 500
+S + +++AT + N L +EI D + +E +++R+ +P V
Sbjct: 3 SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62
Query: 501 HAATLLDACVANCGRFFHLEVASRDF 578
A LLD CV NCG FH ++AS +F
Sbjct: 63 LALHLLDICVKNCGYPFHFQIASEEF 88
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 309 MGIFGTSSPFDQD---VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH 479
MGIF + P ++R TS + E+ I+++ + + T +E R + ++L +
Sbjct: 1 MGIFSETVPITAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKY 60
Query: 480 PDPHVQVHAATLLDACVANCGRFF 551
PH QV A +L A + N G F
Sbjct: 61 STPHEQVRALVILQALIENAGSHF 84
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 348 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 524
++ AT + + ++I D + + +E A++R++ +P V A LLD
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71
Query: 525 CVANCGRFFHLEVASRDFETEXRR 596
CV NCG F L++AS++F E R
Sbjct: 72 CVKNCGYAFRLQIASKEFLNELVR 95
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 478 IPTHTYRFTPPHCSTPALQIAVVSSTWKSPRETSRPSXGAC 600
I TH +++ H TP + + +SS+ SP + + S C
Sbjct: 146 ISTHLAKYSIHHMGTPPSKPSFLSSSVSSPASSKQKSLFQC 186
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 367 SLVARSTS*SKGEEVPNIPILLTKKHLLDYMLLIKIL 257
SL+A + S ++ ++ + LT++ L DY +IKIL
Sbjct: 318 SLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 457 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 359
AR+HSFA E+ A IS+ + HS V F V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 402 EICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDF 578
E C +A SS S + LRA+ P + LD V NC +F H + DF
Sbjct: 1573 EACRQALTSSKSVRTKLRAISTIQRFPVSEW----VSKLDTHVRNCIKFSHKQNLEEDF 1627
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 318 FGTSSPFDQDVERATSENNTSEEWGLIMEI 407
FG++ P D++ + T+ +NTS + L +I
Sbjct: 331 FGSTEPIDEEEKSKTASDNTSLQTSLFGKI 360
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 6.5
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -2
Query: 413 ITYLHDQSPLLAGVIFTRCAFNILIKRRGSAKYPHF-VNKKTST*LYVIDKNIK*FLILK 237
+TYLH + +L R K P F +++K Y+ LI
Sbjct: 546 VTYLHRILNAIKETYSGYLLLTVLCMRLNIIKTPSFTLDEKIQESYYMAHYRP---LINL 602
Query: 236 SE*NRILQTKISCFMKNLRNKNTDYII 156
+ +L+++ C +KNL+N +TD +I
Sbjct: 603 RQPKPLLRSEADCIIKNLQNFSTDDLI 629
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 300 VNKMGIFGTSSPFDQDVERATSENNTSEEWGLIMEICD 413
+N++ ++ D D++ SEN SE+WGL ++C+
Sbjct: 1082 INQLSLYIFEMFMDDDLK--LSEN--SEDWGLFSKLCN 1115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,231
Number of Sequences: 5004
Number of extensions: 46218
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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