Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F01
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53310| Best HMM Match : VHS (HMM E-Value=0)                        107   9e-24
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    62   3e-10
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      53   2e-07
SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         29   3.9  
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
          Length = 253

 Score =  107 bits (256), Expect = 9e-24
 Identities = 46/96 (47%), Positives = 65/96 (67%)
 Frame = +3

Query: 315 IFGTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHV 494
           + G S       E+ATSE NT+E+W +IMEICD+   S    K+ LR++M+R+ H +PH+
Sbjct: 33  VVGRSKTKQTGSEKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRVIHRNPHI 92

Query: 495 QVHAATLLDACVANCGRFFHLEVASRDFETEXRRLL 602
            + A TLL ACV NCG+ FHLE+ SRDF +E + +L
Sbjct: 93  AMQALTLLSACVNNCGKVFHLEICSRDFVSEAKSIL 128


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
 Frame = +3

Query: 354 RATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA-TLLDACV 530
           RAT     SE+W L +EICD    +    K+  +A+ +RL +      V    T+L++C+
Sbjct: 2   RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNNKNFKSVLLTLTVLESCI 61

Query: 531 ANCGRFFHLEVASRDFETEXRRLLS 605
            NCG  FH+ VA ++F  E  +LLS
Sbjct: 62  KNCGHRFHVLVAKKEFLDEMTKLLS 86


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 37/60 (61%)
 Frame = +3

Query: 423 ASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEXRRLL 602
           A+    K  + A+ +++   +PHV  +A T+L+AC+ NCG   H E+A++DF  E R L+
Sbjct: 105 AAPAQPKFAVSAIKKKMFDRNPHVAKYALTVLEACMKNCGSIIHDEIATKDFMDEMRNLI 164


>SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -2

Query: 545 TTAICNAGVEQCGGVNLYVWVGMRQAPHDGTETLLRTGRRCTGAITYLHDQSPLLAGVIF 366
           TT   ++G+E  GG+N  +W G   A        +  G + TG I Y+    PL+  +IF
Sbjct: 260 TTLGISSGIEDGGGMNWKLW-GCLVATWILVWLCMCKGIKVTGKIVYITATLPLILLIIF 318


>SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 434 GRRCTGAITYLHDQSPLLAGVIFTRCAFNIL 342
           G RCT  I Y HD  P+ +G ++ + + N +
Sbjct: 156 GSRCTSCIFYRHDAYPISSGRLYEQTSNNAI 186


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 397  SWRYVIAPVHLLPVRRSVSV-PSCGAWRIPTHTYRFTPPHCSTPALQIA 540
            S R V+ P  ++    S S+ PS  +WRIPT +   TP    TP   ++
Sbjct: 975  STRNVLEPSSIMT---STSILPSTSSWRIPTSSSVTTPTSAPTPTTPVS 1020


>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 321 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKEC 449
           GT   FDQ      SEN +  +  L+  +CD +  S + + +C
Sbjct: 135 GTDRDFDQQFGSEDSENESDSDEDLV--LCDSSSDSDSDSSDC 175


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 496  RFTPPHCSTPALQIAVVSSTWKSPRETSRPSXGACCLA 609
            RF  P C   + + AV + TW    +TS P+     LA
Sbjct: 904  RFGIPECLFSSAEFAVFAKTWAFEHKTSSPTYAQSYLA 941


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 205 IFV*SILFHSDFSIKNYLIFLSITYNQVDVF 297
           I V  I+F S FS  +++++ +IT   VD+F
Sbjct: 102 IIVIIIIFSSSFSCHHHIVYSTITKTTVDLF 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,831
Number of Sequences: 59808
Number of extensions: 347344
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)