Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_F01
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    68   5e-12
U97407-8|AAN84851.1|  397|Caenorhabditis elegans Prion-like-(q/n...    58   7e-09
U97407-7|AAB52480.2|  457|Caenorhabditis elegans Prion-like-(q/n...    58   7e-09
U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    58   7e-09
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    58   7e-09
AF003385-3|AAB54248.2|  228|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 31/93 (33%), Positives = 51/93 (54%)
 Frame = +3

Query: 327 SSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHA 506
           ++ F + +++AT        W  I+   D   +    AK  L+A+ +R+ H +PHV  H 
Sbjct: 2   ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQHENPHVVNHT 61

Query: 507 ATLLDACVANCGRFFHLEVASRDFETEXRRLLS 605
             +LDACV NCG   H EVA+R+F  + + L++
Sbjct: 62  LLVLDACVKNCGHKVHAEVATREFMEDFKNLVT 94


>U97407-8|AAN84851.1|  397|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform b protein.
          Length = 397

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/90 (32%), Positives = 48/90 (53%)
 Frame = +3

Query: 330 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 509
           S ++  + + T+   T E W  I+  CD        +K  ++++ +RL + DPHV + A 
Sbjct: 2   SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 61

Query: 510 TLLDACVANCGRFFHLEVASRDFETEXRRL 599
           ++LD+C ANC   F  EV+S  F  E + L
Sbjct: 62  SVLDSCWANCEERFRKEVSSAQFINELKAL 91


>U97407-7|AAB52480.2|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform a protein.
          Length = 457

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/90 (32%), Positives = 48/90 (53%)
 Frame = +3

Query: 330 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 509
           S ++  + + T+   T E W  I+  CD        +K  ++++ +RL + DPHV + A 
Sbjct: 10  SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 69

Query: 510 TLLDACVANCGRFFHLEVASRDFETEXRRL 599
           ++LD+C ANC   F  EV+S  F  E + L
Sbjct: 70  SVLDSCWANCEERFRKEVSSAQFINELKAL 99


>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
 Frame = +3

Query: 327 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 494
           ++P  + +E AT  N   +E WGL MEICD    +    ++ +RA+ +RL +    +  V
Sbjct: 36  ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95

Query: 495 QVHAATLLDACVANCGRFFHLEVASRDFETEXRRLL 602
            ++  T+L+  V NC   FH+ V ++DF  +  +L+
Sbjct: 96  VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
 Frame = +3

Query: 327 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 494
           ++P  + +E AT  N   +E WGL MEICD    +    ++ +RA+ +RL +    +  V
Sbjct: 36  ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95

Query: 495 QVHAATLLDACVANCGRFFHLEVASRDFETEXRRLL 602
            ++  T+L+  V NC   FH+ V ++DF  +  +L+
Sbjct: 96  VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLI 131


>AF003385-3|AAB54248.2|  228|Caenorhabditis elegans Hypothetical
           protein R08F11.6 protein.
          Length = 228

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +1

Query: 175 LFLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQVDVFLLTKWGYLALP 330
           L  KF + Q + V  I  +S  S+ + LIFLS+TYNQ       + GY +LP
Sbjct: 90  LLTKFGMHQTLIVFGI--YSMLSLFSKLIFLSLTYNQNVSLQNRQEGYCSLP 139


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 166 ITLFLTKVISYTKVFIIYRIFTVRISILWR 77
           I +F T ++    VFI Y  F + ISI WR
Sbjct: 4   IAVFTTLILILFSVFICYLNFLLLISIFWR 33


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 265 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 387
           L ++YNQ+  F ++ W +   P+L    L++ R++  P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 265 LSITYNQVDVFLLTKWGYLALPRLLIKMLNAQRVKITPARS 387
           L ++YNQ+  F ++ W +   P+L    L++ R++  P+ S
Sbjct: 296 LDLSYNQIQSFHISSWSH--TPKLKWLSLHSNRIQSLPSGS 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,972
Number of Sequences: 27780
Number of extensions: 264840
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)