Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E24
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.48 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 267 LVSSKWFFPRWAQAVYLY 320
           L+  K+FFPRW Q + ++
Sbjct: 646 LILDKFFFPRWRQTLAMW 663


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 460 SKPNTATDDFKNNKPNILSLH 522
           S  NT+T    +NKPN   L+
Sbjct: 427 SNTNTSTSSTNSNKPNSSDLN 447


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 283 GFFHDGPRRFICTNDKKTHFCKLTSLNLSILH 378
           G   D  R F+  +  K H   + +  L++LH
Sbjct: 219 GLLLDTARNFLTVSKIKKHIDGMAASKLNVLH 250


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 711 NFPITHXIACLPLPA 667
           N P+TH IA  P P+
Sbjct: 335 NLPLTHNIAHNPYPS 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,551
Number of Sequences: 336
Number of extensions: 4071
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)