Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_E24
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 64 1e-11
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 50 3e-07
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 2.8
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 2.8
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 26 6.4
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 26 6.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 8.5
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 111 MXLWTSAHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWF 287
M ++ S H F +P+E V+ A W+KYPN VI D ++RKV+D GVL+T RL++
Sbjct: 1 MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQA 60
Query: 288 FPRW 299
PRW
Sbjct: 61 LPRW 64
Score = 58.8 bits (136), Expect = 7e-10
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Frame = +2
Query: 416 LIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEA 595
LI A+ CY E S V+ R +TL T+NLTF + VDETV Y+PHP + T+ +QEA
Sbjct: 68 LIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP-ELEATVFQQEA 126
Query: 596 VVTVQGV--PLSSYMEDLLTNKISLNAGKGRQAIXWVIGKFDTEI 724
+ LS+ +E + A +G++ V+ K + +
Sbjct: 127 RIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESVLEKINMSV 171
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 123 TSAHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFPRW 299
T N W TV+ A +YPNP + V+ DV+ER V D G L+T RL+ + PRW
Sbjct: 6 TDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLPRW 65
Query: 300 A 302
A
Sbjct: 66 A 66
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 536 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 438
FH Q N D++L + FL V ++G+L +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 123 TSAHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTH 263
+S+ +HP T A PNP+ P+ + DV + +D ++ H
Sbjct: 159 SSSMMSSHPIPTPAIQRTSSIPNPLTPSYVVFDVAKPVPIDVNIYDH 205
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 491 KTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNK 655
+TT +T E PHP +S LL PL+ Y+ ++ N+
Sbjct: 77 ETTTVTPTVTATAQELSTLNPHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNR 131
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 569 SKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLN 667
S L ++++ V+GV +++ L TNKI+L+
Sbjct: 22 SVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 451 DIRS--KPNTATDDFKNNKPN 507
D+RS ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 368 LSCMWKIMNLQTLMTLLIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAV 529
+SC + + QT + ++ A +AS +S NP + T LT ++ V
Sbjct: 157 VSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEATFADVLLTIISFLGV 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,763
Number of Sequences: 5004
Number of extensions: 65462
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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