Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_E24
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0533 - 29818276-29818866 41 0.001
09_04_0567 + 18585556-18586113 35 0.058
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485... 31 0.72
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796... 30 2.2
06_03_1348 - 29497084-29497384,29497464-29497634,29497717-294985... 29 5.1
06_03_0106 + 16702019-16702600 29 5.1
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 29 5.1
10_08_0674 + 19788198-19789817 28 8.8
>02_05_0533 - 29818276-29818866
Length = 196
Score = 40.7 bits (91), Expect = 0.001
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 111 MXLWTSAHTFNHPWETVAQAAWRKYPNP 194
M ++T H + HPW+ V AAWRK+ +P
Sbjct: 1 MVVYTQEHVYRHPWDRVTAAAWRKFTDP 28
Score = 37.1 bits (82), Expect = 0.014
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +2
Query: 428 AKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK-TLLKQEAVVT 604
A +C+ E S V+ +R M + N++ I V+E Y PHP + T +QE T
Sbjct: 85 AALCHCVETSLVDAPRRAMDVVVRNVSLRGLIEVEERSTYRPHPERPEEWTQFRQE--TT 142
Query: 605 VQGVPLSSY------MEDLLTNKISLNAGKGRQAIXWVIGKFDTE 721
++ PLS+ +E + N+ KGR+ + + + E
Sbjct: 143 IRCRPLSALAAVAEKVETRCAERFLQNSAKGREVVERICRYLEAE 187
>09_04_0567 + 18585556-18586113
Length = 185
Score = 35.1 bits (77), Expect = 0.058
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 120 WTSAHTFNHPWETVAQAAWRKY 185
+T H + HPW V AAWRK+
Sbjct: 5 YTQEHVYRHPWHRVTAAAWRKF 26
Score = 33.9 bits (74), Expect = 0.13
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +2
Query: 395 LQTLMTLLIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK 574
L L+ L+ A + E + V+ R M + + N + V+ET Y PHP +
Sbjct: 69 LPLLLRGLVAAADVVLCVEHTTVDGPARAMRVISRNANLRALVHVEETCSYRPHPERPDE 128
Query: 575 -TLLKQEAVVTVQGVPLSS-------YMEDLLTNKISLNAGKGRQAI 691
TL +QE +++ PL++ +E + NA +GR+ +
Sbjct: 129 WTLFRQE--TSIRCAPLAAVAAWAAEMVERRCAERFRQNASQGREVV 173
>09_06_0315 -
22246879-22247643,22247722-22247862,22248509-22248561,
22248755-22248919,22249685-22249799,22249937-22250025,
22250578-22250608
Length = 452
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 156 TVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKW-FFPRW 299
TV++A P P++PAV ++ +VV + + + S W FF RW
Sbjct: 47 TVSKAEVLASPPPISPAVNAVIIIRNRVVLSIANIFSVAVSLWPFFVRW 95
>07_01_0943 -
7959813-7960113,7960193-7960363,7960446-7961278,
7961360-7961821,7961899-7962606
Length = 824
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 413 LLIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 562
+ I T K ++ + V P MTL T TF + D V+ TP PS
Sbjct: 435 VFIDTVKDTWSGYLLPVPPNDEIMTLGDTRKTFIQWPKEDIVVKMTPRPS 484
>06_03_1348 -
29497084-29497384,29497464-29497634,29497717-29498549,
29498631-29499092,29499171-29499904,29499993-29500122
Length = 876
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 419 IGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 562
I T K ++ V P MTL TF + D V+ TPHPS
Sbjct: 489 IDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPHPS 536
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 218 CPYDGWIHRI-RIFSPCCLSNCFP 150
CP+ GW H + R+ SP +C P
Sbjct: 85 CPHHGWTHHLRRVISPPSSPDCMP 108
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 419 IGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 562
I T K ++ V P MTL TF + D V+ TPHPS
Sbjct: 457 IDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPHPS 504
>10_08_0674 + 19788198-19789817
Length = 539
Score = 27.9 bits (59), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 209 DGWIHRIRIFSPCCLSNCFPW 147
DGW+ +R+ + C S C W
Sbjct: 276 DGWVRLVRLAAESCASVCLEW 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,594
Number of Sequences: 37544
Number of extensions: 389908
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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